Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_J13
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 31 0.45
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 31 0.45
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 31 0.45
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 28 4.2
U64852-4|AAB04967.1| 192|Caenorhabditis elegans Galectin protei... 27 7.3
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 27 7.3
U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase ... 27 7.3
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 7.3
AB038501-1|BAB11966.1| 192|Caenorhabditis elegans galectin LEC-... 27 7.3
AC006617-12|AAF39774.1| 324|Caenorhabditis elegans Serpentine r... 27 9.6
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 31.5 bits (68), Expect = 0.45
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = -2
Query: 371 AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 192
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563
Query: 191 ESRDGDAVHG 162
S +G++ +G
Sbjct: 1564 GSENGESGNG 1573
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 31.5 bits (68), Expect = 0.45
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = -2
Query: 371 AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 192
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1542 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1601
Query: 191 ESRDGDAVHG 162
S +G++ +G
Sbjct: 1602 GSENGESGNG 1611
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 31.5 bits (68), Expect = 0.45
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = -2
Query: 371 AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 192
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563
Query: 191 ESRDGDAVHG 162
S +G++ +G
Sbjct: 1564 GSENGESGNG 1573
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 377 IAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSA 279
+ AAAP A+P AP A ++AP VL +A
Sbjct: 55 VLAAAPTVLAAPAPLLAPPAPLLAPPAPVLAAA 87
>U64852-4|AAB04967.1| 192|Caenorhabditis elegans Galectin protein
10 protein.
Length = 192
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -2
Query: 362 PVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGD 207
P+H++ H + KV A + + V+ HH +Y H +Y + A G GD
Sbjct: 82 PLHHSEHFHLSI---KVHAGYYHISVNGHHLADYPH-RYPYQSVQAIGLKGD 129
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 236 YSVADGHSGDNKSQHESRDG 177
YS+A G+ GD K H+SR G
Sbjct: 452 YSLATGNWGDQKKAHQSRAG 471
>U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase II,
second largestsubunit protein.
Length = 859
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 236 YSVADGHSGDNKSQHESRDG 177
YS+A G+ GD K H+SR G
Sbjct: 253 YSLATGNWGDQKKAHQSRAG 272
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = -2
Query: 281 AHHEEEYAHPKYDFAYSVADGHSGDNKSQ---HESRDGDAVHGEYTLLEADGSVRKVEYT 111
AHH E H + + A H G ++S H S HGE+ A +
Sbjct: 417 AHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHH 476
Query: 110 ADDHHG 93
A HHG
Sbjct: 477 APAHHG 482
>AB038501-1|BAB11966.1| 192|Caenorhabditis elegans galectin LEC-10
protein.
Length = 192
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -2
Query: 362 PVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGD 207
P+H++ H + KV A + + V+ HH +Y H +Y + A G GD
Sbjct: 82 PLHHSEHFHLSI---KVHAGYYHISVNGHHLADYPH-RYPYQSVQAIGLKGD 129
>AC006617-12|AAF39774.1| 324|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 67 protein.
Length = 324
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 359 VHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDF 240
VHY P +++ + + AP++ V H+E HP+YD+
Sbjct: 135 VHYIFP--FSSQILMLTAPSNHAAV--HNETLILHPEYDY 170
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,535,323
Number of Sequences: 27780
Number of extensions: 86316
Number of successful extensions: 433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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