Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_J12
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 29 0.52
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 29 0.90
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual 28 1.2
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 2.8
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 27 3.6
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 27 3.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 3.6
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 4.8
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 26 4.8
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 25 8.4
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 25 8.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 8.4
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 8.4
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 29.5 bits (63), Expect = 0.52
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -3
Query: 420 TDVNITIPLPSGNTSVVVHQWEGSYTQKGRNLIWSIPLVSKQQ--KTGSLEFTVTPSIPN 247
TD N + L +GN V + + YT K LI + + + + GS+ P++PN
Sbjct: 752 TDANARVELHTGNKMVTIPKENLLYTTKTGELISYTEFIERSRGIRPGSISTADGPNVPN 811
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pombe|chr
3|||Manual
Length = 983
Score = 28.7 bits (61), Expect = 0.90
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 436 LLQLVFDIDVTSSVDAFGRPTVYGKRSQLVIVGSGQPPLEDSDVAVHREGALSLLQPNHA 615
++ L F + DA G T+Y K VG L+++ + R L L P H+
Sbjct: 883 IMNLWFSVLSEVEEDANGDATIYYKNDDYSAVGFY---LDETSEEMTRRKQLLLKDPVHS 939
Query: 616 GRAERFFVHVWM 651
+ FF+ V+M
Sbjct: 940 VNSRSFFISVFM 951
>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 45 IHIMFPTLRSKNQTTXHLFKQTRICLRGN 131
IH++FPTL ++ ++K+T I L N
Sbjct: 131 IHVVFPTLLPRHDVLQKVYKETVILLANN 159
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 514 SQLVIVGSGQPPLEDSDVAVHREGALSLLQPNHAGRAER 630
SQL + +GQP SD ++ A L QPNH+ +E+
Sbjct: 2 SQLYAL-NGQPLAGKSDDLANKLAAFGLSQPNHSSLSEQ 39
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = -3
Query: 618 TGVIGLKQAQRPFPMHSDVGVLKWRLATTNDDKLAPLSVNCWPSEGVNGGCDV-NIEYEL 442
T + + +P +H D+ + LA N KL C P G + +EY++
Sbjct: 149 TEAVAVMHYLKPPLIHRDLKIENVLLAAPNSYKLCDFGSACHPIPGAKTAAEAKQLEYDI 208
Query: 441 EQ 436
E+
Sbjct: 209 EK 210
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Frame = +1
Query: 22 VFLIIKNQFTSCFPLSAAK--IKQLII----CLNKLVFVCVETDLLREVNGRPVFRLRHF 183
V LI+ N FPLS + + LI CL+ L+ V DL+ + RP +R +
Sbjct: 451 VLLILTNDQKWMFPLSECQDVVDALIDVATQCLDNLLSVLPNEDLMEIADKRPSYRQLLY 510
Query: 184 DSC 192
+ C
Sbjct: 511 NCC 513
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 686 TTKTRDRYSCRPIQTWTKKRSARPA*LG*SRLNAPSRCTATSESSS 549
T K DR+S + +++W + P +N+ S CTA SES S
Sbjct: 1766 TDKDIDRFSLKMLESWGLFENKAPF------VNSTSICTAVSESRS 1805
>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 432 HLVLTDVNITIPLPSGNTSVVVHQWEGSYTQK 337
HL LTD N+TI + T VV++ + S++ K
Sbjct: 325 HLRLTDDNLTIAYRNDKTGEVVYKDKFSFSNK 356
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 421 DRCQYHHTASFWQHFGGGAPVGG*LHAEGTQPHLEHSAREQTTE 290
++C ++ S Q+ G PVGG +H+ Q ++S + E
Sbjct: 41 EKCTFNKYYSSSQYQHTGRPVGGNIHSSSNQQRQKNSEAPRINE 84
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 82 KQLIICLNKLVFVCVETDLLREVNGRP-VFRLRH 180
K+ I+ NK+ +V +E D + +NG P + RL H
Sbjct: 87 KKYIVKENKVKYVNIERDSMMRLNGFPGISRLFH 120
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 25.4 bits (53), Expect = 8.4
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = -3
Query: 561 GVLKWRLATTNDDKLAPLSVNCWPSEGVNGGCDVNIEY-ELEQDHLVLTDVNITIPLPSG 385
G+ L T DK+A L + ++ + D+ + EL QD + P S
Sbjct: 262 GMTSDSLQTVTPDKIAILDLLA--TQSIASSTDMLTAFRELTQDFPIYAHYLSIQPDVSN 319
Query: 384 NTSVVVHQWEGSYTQKGRNLIW 319
+ ++Q++ Y +G N IW
Sbjct: 320 DLIEELNQFQSQYVPEGINTIW 341
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 325 EVASLLRVATLPLVHHHRSVARRKRYGDIDICQHQVILLQLVFDI 459
E+++ LRVA L V R D+ +HQ ++LQL +I
Sbjct: 843 ELSNDLRVANSKLSECSDDVRRLTLQNSFDLREHQTLVLQLQSNI 887
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 28 LIIKNQFTSCFPLSAAKIKQLIICLNKLVFVCVET 132
LI+K LS+ + I CL+KL F C ET
Sbjct: 748 LILKKHDNWKVSLSSRAPSEAINCLSKLAFQCHET 782
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,498
Number of Sequences: 5004
Number of extensions: 68790
Number of successful extensions: 185
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -