Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_J12
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1245 - 35693949-35694038,35694974-35695070,35695170-356952... 140 1e-33
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 140 1e-33
05_03_0443 + 14057080-14057201,14058566-14058698,14058758-140587... 138 4e-33
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153... 132 2e-31
08_02_0432 - 17103230-17103322,17103403-17103542,17104950-171052... 40 0.002
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 30 1.6
09_04_0383 + 17141534-17142046 30 1.6
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692... 30 1.6
07_01_1127 + 10456895-10457388,10457488-10458112 30 2.2
12_02_0960 - 24826918-24827373,24828357-24828471,24831110-248312... 29 2.9
07_01_0200 + 1433859-1434377 29 5.0
07_01_0196 + 1400708-1401226 29 5.0
07_01_0192 + 1367558-1368076 29 5.0
07_01_0188 + 1334405-1334923 29 5.0
01_06_0933 - 33161687-33162205,33162290-33162376,33162459-331626... 29 5.0
08_02_1493 + 27512473-27512557,27512670-27513351,27513459-275135... 28 6.6
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 28 8.8
04_01_0586 - 7619541-7620656 28 8.8
03_02_0748 + 10896467-10897447 28 8.8
01_01_1064 + 8393519-8394475 28 8.8
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 28 8.8
>01_06_1245 -
35693949-35694038,35694974-35695070,35695170-35695232,
35696079-35696232,35696303-35696489,35697001-35697314,
35698079-35698220,35698445-35698656,35699068-35699244,
35699589-35699628,35700056-35700155,35701731-35701804
Length = 549
Score = 140 bits (339), Expect = 1e-33
Identities = 78/205 (38%), Positives = 116/205 (56%), Gaps = 3/205 (1%)
Frame = -3
Query: 708 GRIHVHVDNKDSRPLQLQTHPNVDKEAFRSTGVIGLKQAQRPFPM-HSDVGVLKWRLATT 532
G I + ++N+D L +THPN++KE F S ++G K RPFP ++ ++KWR+
Sbjct: 348 GFIQLQIENQDVPGLNFKTHPNINKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQEL 407
Query: 531 NDDKLAPLSVNCWPSEGVNGGCDVNIEYELEQDHLVLTDVNITIPLPSGNTSVVVHQWEG 352
N+ L PL+VNCWPS N VNIEYE + L +V I+IPLP+ + V Q +G
Sbjct: 408 NESSL-PLAVNCWPSVSGNETY-VNIEYEASE-MFDLHNVVISIPLPALREAPGVRQIDG 464
Query: 351 SYTQKGRNLI--WSIPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTAVKV 178
+ RN + WSI LV + ++GSLEFTV + P+ FFP+SV +++ + + L +
Sbjct: 465 EWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPAADPSTFFPISVGFSASNTFSDLKVTAI 524
Query: 177 TQAEDGSPVDFSQEISFHADKYEFV 103
+GSP FSQ Y+ V
Sbjct: 525 RPLREGSPPKFSQRNRLVTYNYQVV 549
>05_03_0442 + 14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 140 bits (338), Expect = 1e-33
Identities = 76/206 (36%), Positives = 121/206 (58%), Gaps = 4/206 (1%)
Frame = -3
Query: 708 GRIHVHVDNKDSRPLQLQTHPNVDKEAFRSTGVIGLKQAQRPFPM-HSDVGVLKWRLATT 532
G I + ++N+D L +THPN++K+ F S V+G K RPFP ++ ++KWR+
Sbjct: 608 GFIQLQIENQDVPGLSFKTHPNINKDLFNSQQVVGAKDPNRPFPSGQNETPLVKWRIQGM 667
Query: 531 NDDKLAPLSVNCWPSEGVNGG-CDVNIEYELEQDHLVLTDVNITIPLPSGNTSVVVHQWE 355
++ L PLSVNCWPS V+G VNIEYE + L +V I+IPLP+ + V Q +
Sbjct: 668 DESSL-PLSVNCWPS--VSGSETYVNIEYEAAE-MFDLHNVVISIPLPALREAPSVRQID 723
Query: 354 GSYTQKGRNLI--WSIPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTAVK 181
G + RN + WSI L+ + ++GS+EF V P+ P+ FFP+S+ +++ ++ + L
Sbjct: 724 GEWKYDSRNSVLEWSILLIDQSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSDLKVTG 783
Query: 180 VTQAEDGSPVDFSQEISFHADKYEFV 103
+ +DG+P +SQ A Y+ V
Sbjct: 784 IRPLKDGNPPKYSQRARLVAANYQVV 809
>05_03_0443 + 14057080-14057201,14058566-14058698,14058758-14058797,
14059175-14059398,14059904-14059976,14060364-14060614,
14060892-14061060,14061307-14061611,14062023-14062209,
14062311-14062464,14063186-14063248,14063337-14063433,
14063530-14063619
Length = 635
Score = 138 bits (334), Expect = 4e-33
Identities = 74/205 (36%), Positives = 118/205 (57%), Gaps = 3/205 (1%)
Frame = -3
Query: 708 GRIHVHVDNKDSRPLQLQTHPNVDKEAFRSTGVIGLKQAQRPFPM-HSDVGVLKWRLATT 532
G I + ++N+D L +THPN++K+ F S V+G K RPFP ++ ++KWR+
Sbjct: 434 GFIQLQIENQDVPGLSFKTHPNINKDLFNSQQVVGAKDPNRPFPSGQNETPLVKWRIHGM 493
Query: 531 NDDKLAPLSVNCWPSEGVNGGCDVNIEYELEQDHLVLTDVNITIPLPSGNTSVVVHQWEG 352
++ L PLSVNCWPS N VNIEYE + L +V I+IPLP+ + V Q +G
Sbjct: 494 DESSL-PLSVNCWPSVSGNETY-VNIEYEAAE-MFDLHNVVISIPLPALREAPSVRQIDG 550
Query: 351 SYTQKGRNLI--WSIPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTAVKV 178
+ RN + WSI L+ + ++GS+EF V P+ P+ FFP+S+ +++ ++ + L +
Sbjct: 551 EWRYDSRNSVLEWSILLIDQSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSDLKVTGI 610
Query: 177 TQAEDGSPVDFSQEISFHADKYEFV 103
+DG+P +SQ Y+ V
Sbjct: 611 RPLKDGNPPKYSQRARLVTANYQVV 635
>08_02_0433 - 17114880-17114972,17115053-17115149,17115244-17115306,
17115765-17115918,17115992-17116178,17116567-17116871,
17117638-17117803,17118261-17118652,17119032-17119208,
17119565-17119604,17119762-17119809,17122393-17122428,
17122832-17123104
Length = 676
Score = 132 bits (320), Expect = 2e-31
Identities = 73/206 (35%), Positives = 118/206 (57%), Gaps = 4/206 (1%)
Frame = -3
Query: 708 GRIHVHVDNKDSRPLQLQTHPNVDKEAFRSTGVIGLKQAQRPFPM-HSDVGVLKWRLATT 532
G I + ++++D L +THPN++K+ F S ++G K RPFP ++ ++KWR+
Sbjct: 474 GLILLQIESQDIPGLSFKTHPNINKDLFNSQQILGAKDPIRPFPSGQNETPLVKWRIQGM 533
Query: 531 NDDKLAPLSVNCWPSEGVNGGCDVNIEYELEQDHLVLTDVNITIPLPSGNTSVVVHQWEG 352
N+ L PLSVNCWPS + VNIEYE + L V I+IPLP+ + V Q +G
Sbjct: 534 NESSL-PLSVNCWPSI-LGNETYVNIEYEASE-MFDLHSVIISIPLPALREAPRVRQIDG 590
Query: 351 SYTQKGRNLI--WSIPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTAVKV 178
+ RN + WSI L+ + ++GS+EF V P+ P+ F+P+SV +++ + + + +
Sbjct: 591 EWKYDSRNSVLEWSIILIDQSNRSGSMEFVVPPADPSMFYPISVGFSASNTFSNVKVTGI 650
Query: 177 TQAEDGS-PVDFSQEISFHADKYEFV 103
+GS P +SQ + AD Y+ V
Sbjct: 651 RPLNEGSNPPKYSQRVRLVADNYQVV 676
>08_02_0432 -
17103230-17103322,17103403-17103542,17104950-17105211,
17105391-17105495,17105496-17105558,17106876-17107022
Length = 269
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = -3
Query: 288 TGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTAVKVTQAEDGS-PVDFSQEISFHADKY 112
+GS+EF V P+ P+ FFP+SV +++ + + + + ++GS P +SQ + AD Y
Sbjct: 208 SGSMEF-VPPADPSMFFPISVGFSTSNTFSDVKVPGIRPLKEGSNPPKYSQRVRLVADNY 266
Query: 111 EFV 103
+ V
Sbjct: 267 QVV 269
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = -3
Query: 585 PFPMHSDVGVLKWRLATTNDDKLAPLSVNCWPSEG-VNGGCDVNIEYELEQDHLVLTDVN 409
P P++ +L+ T DDKL + V S + G DVN+ E L V+
Sbjct: 136 PDPIYEATRLLQDSRTKTYDDKLYKIVVAMGTSRSSILGELDVNLAEFAE----ALKPVS 191
Query: 408 ITIPLPSGNTSVVVHQWE 355
I +PL ++H WE
Sbjct: 192 IALPLRGCEFGTILHVWE 209
>09_04_0383 + 17141534-17142046
Length = 170
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 358 PLVHHHRSVARRKRYGDIDICQH 426
PL HHHR + R+GD+ C +
Sbjct: 75 PLTHHHRGTSYSGRHGDVTRCNY 97
>05_05_0385 +
24566916-24567503,24568609-24568824,24568916-24569241,
24569906-24570338,24570769-24571281
Length = 691
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 570 CASGRGVEPASAQSRRSSGTLLCPRLDGSATVTVSSLCC 686
CA+G V+P + SG L+C LDG V++L C
Sbjct: 81 CAAGLMVDPLFLYAVSLSGPLMCVFLDGWLAAAVTALRC 119
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -3
Query: 612 VIGLKQAQRPFPMHSDVGVLKWRLATTNDDKLAPLSVNCWPSEGVNGGCDVNIEYELEQD 433
+ G A + FP D ++ TNDD +C S+ N C+VNI ++ D
Sbjct: 197 ITGSSVAHQEFPPQEDGHNADNNISNTNDDDTTNNHASCPISDHSNQACNVNIIHQGVDD 256
Query: 432 HL 427
+
Sbjct: 257 SI 258
>12_02_0960 -
24826918-24827373,24828357-24828471,24831110-24831236,
24831517-24831559,24831964-24832022,24832850-24833141
Length = 363
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 292 LLFAHERNAPDEVASLLRVATLPLVHHHRSV 384
LL HER P V L+ V L L H +R+V
Sbjct: 92 LLGGHERATPKSVLELMNVKDLTLAHMYRTV 122
>07_01_0200 + 1433859-1434377
Length = 172
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 282 SRFSVVCSRAECSR*GCVPSACSYPPTGAPP 374
S S+ C+RA CS G V +C+Y P G P
Sbjct: 137 STTSIGCARAACSNGGGVIISCNYFPPGNFP 167
>07_01_0196 + 1400708-1401226
Length = 172
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 282 SRFSVVCSRAECSR*GCVPSACSYPPTGAPP 374
S S+ C+RA CS G V +C+Y P G P
Sbjct: 137 STTSIGCARAACSNGGGVIISCNYFPPGNFP 167
>07_01_0192 + 1367558-1368076
Length = 172
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 282 SRFSVVCSRAECSR*GCVPSACSYPPTGAPP 374
S S+ C+RA CS G V +C+Y P G P
Sbjct: 137 STTSIGCARAACSNGGGVIISCNYFPPGNFP 167
>07_01_0188 + 1334405-1334923
Length = 172
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 282 SRFSVVCSRAECSR*GCVPSACSYPPTGAPP 374
S S+ C+RA CS G V +C+Y P G P
Sbjct: 137 STTSIGCARAACSNGGGVIISCNYFPPGNFP 167
>01_06_0933 -
33161687-33162205,33162290-33162376,33162459-33162695,
33162778-33162886,33162997-33163313,33163398-33163607,
33165380-33165901
Length = 666
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 570 CASGRGVEPASAQSRRSSGTLLCPRLDGSATVTVSSLCC 686
CA+G V+P + SG L+C LDG V+ L C
Sbjct: 66 CAAGLMVDPLFLYAVSVSGPLMCVFLDGWFAAAVTVLRC 104
>08_02_1493 +
27512473-27512557,27512670-27513351,27513459-27513522,
27513734-27513961
Length = 352
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 523 VIVGSGQPPLEDSDVAVHREGALSLLQPNHAGRAERFF 636
V+ GSG PPLE + A+ G+ SL P +G + RF+
Sbjct: 52 VLSGSGTPPLETTGFALSPGGSRSLYAP--SGWSGRFW 87
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +1
Query: 442 QLVFDIDVTSSVDAFGRPTVYGKRSQLVIVGSGQPPLEDSDVAVHREGALSLLQPNHAGR 621
++V ++ T+ V +FGR + + LV + PL++S++ VH +
Sbjct: 754 KMVDEVKPTALVLSFGRSSALPSETDLVKMFGRYGPLKESEIEVHASSNTVKVVFKKRAD 813
Query: 622 AERFF 636
AER F
Sbjct: 814 AERAF 818
>04_01_0586 - 7619541-7620656
Length = 371
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 612 VIGLKQAQRPFPMHSDVGVLKWRLATTNDDKLAPLS-VNCWPSEGVNGGCDVNIEYELEQ 436
+ G A + FP D ++ TNDD + + +C S+ N C+VNI ++
Sbjct: 274 ITGSSVAHQEFPPQEDGHNADNNISNTNDDDVTTNNHASCPNSDHSNQACNVNIIHQDVD 333
Query: 435 DHL 427
D +
Sbjct: 334 DSI 336
>03_02_0748 + 10896467-10897447
Length = 326
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 294 VVCSRAECSR*GCVPSACSYPPTGAPPPKCCQKEA 398
+V +A+ R G + A P +PP KCC+ EA
Sbjct: 274 IVARKADPRRGGGLAGARGAVPVVSPPCKCCKMEA 308
>01_01_1064 + 8393519-8394475
Length = 318
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -1
Query: 716 SSSVAYTCTSTTKTRDRYSCRPIQTWTKKR-SARPA*LG*SRLNAPSRCTATSESSSGGW 540
S S A + +S+T T S T++R S R LG + + + A +E SSG W
Sbjct: 177 SDSFASSSSSSTSTSSSSSSSSSAKSTRRRISLRDLLLGSTANSDSATAAAAAERSSGFW 236
Query: 539 P 537
P
Sbjct: 237 P 237
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = -3
Query: 330 NLIWSIPLVSKQQK-----TGSLEFTVTPSIPNDFFPLSVTWTSE 211
N+ S P ++K++ T +LEF + ++ N F P++ WT+E
Sbjct: 531 NVKSSTPSINKEELLKLLGTLALEFMLVSAVANSFRPVNARWTTE 575
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,245,805
Number of Sequences: 37544
Number of extensions: 543770
Number of successful extensions: 1893
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1876
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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