Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_J12
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    27   0.18 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.32 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.3  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.0  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 544 PPLEDSDVAV-HREGALSLLQPNHAGRAERFFVHVW 648
           PP+  S   V H+E AL  L+P++  +   +  HVW
Sbjct: 392 PPISGSATPVFHQEMALYYLKPSYDAQEPAWKTHVW 427


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -2

Query: 412 QYHHTASFWQHFGGGAPVGG*LHAEGTQPHLEHSAREQTTENRES*VHRHSV 257
           +YHH A    H    AP+     A G  PH    A   +T + +  +HR S+
Sbjct: 509 EYHHVAPPSGHHASSAPLLAATLAGGLCPH-RRRANSGSTSSGDDELHRASL 559


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 309 LVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALL 193
           LVS Q K  S E  +       FF   + WT   ++AL+
Sbjct: 266 LVSNQDKERSAEVRIAKVAFTIFFLFLLAWTPYATVALI 304


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 309 LVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALL 193
           LVS Q K  S E  +       FF   + WT   ++AL+
Sbjct: 266 LVSNQDKERSAEVRIAKVAFTIFFLFLLAWTPYATVALI 304


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 537 TTNDDKLAPLSVNCWPSEGVNGGCDVN 457
           TTND K+  + ++ W S   NG  +VN
Sbjct: 482 TTNDIKMQKVLIDFWVSFVNNGVPNVN 508


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 537 TTNDDKLAPLSVNCWPSEGVNGGCDVN 457
           TTND K+  + ++ W S   NG  +VN
Sbjct: 482 TTNDIKMQKVLIDFWVSFVNNGVPNVN 508


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/39 (17%), Positives = 23/39 (58%)
 Frame = -3

Query: 726 ISXEQFGRIHVHVDNKDSRPLQLQTHPNVDKEAFRSTGV 610
           I+  Q  + + H+D+ + +P  ++  P+V+++ ++   +
Sbjct: 155 ITPRQSHQSYHHMDSVEYKPEIMEYKPDVEEQRYKQVEI 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,813
Number of Sequences: 438
Number of extensions: 4508
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)