Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_J11
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.69 
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    27   2.8  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   6.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.5  

>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 234 IIMLLLNMCCVFYYYRLDLVLCNQY 160
           II+ L  + C+FY Y+  + LCN+Y
Sbjct: 32  IILFLNTIVCIFYVYK--IALCNEY 54


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 249 ILFSNIIMLLLNMCCVFYYYRLD 181
           ++F N     L  CCV++Y+ L+
Sbjct: 34  VIFINFFFFYLCRCCVYFYHTLE 56


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 249 ILFSNIIMLLLNMCCVFYYYRLDLVLCNQYCTKQCNFVYTF 127
           ++ SNI+ L   +     +Y LD +LC +        V+TF
Sbjct: 549 VMKSNILRLFYVLFLFACFYGLDYILCAELLQAFLRVVFTF 589


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 249 ILFSNIIMLLLNMCCVFYYYR 187
           I F      LL+ CC+FY YR
Sbjct: 717 INFLRCFASLLHNCCIFYAYR 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,730
Number of Sequences: 5004
Number of extensions: 21399
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)