Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_J11
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0757 + 22845825-22846032,22848331-22848498,22848929-228494...    29   3.7  
06_01_0388 - 2773559-2773621,2774141-2774250,2774360-2774423,277...    28   6.5  

>12_02_0757 +
           22845825-22846032,22848331-22848498,22848929-22849434,
           22849890-22850151,22851708-22851942,22854240-22854496,
           22854592-22854635
          Length = 559

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 270 PLPC*CLILFSNIIMLLLNMCCVFYYYRLDLVLCNQ 163
           P  C   ++ SNI +  ++ C +F+Y + D   CNQ
Sbjct: 53  PTSCRLFVVSSNISLAFMS-CLLFFYRQKDYFYCNQ 87


>06_01_0388 -
           2773559-2773621,2774141-2774250,2774360-2774423,
           2775102-2775282,2775355-2775455,2777340-2777426,
           2778028-2778140,2778430-2778679
          Length = 322

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 434 GSFAWGRLGHRFALGRFDSDIXERDRSDGW 523
           G+ +WG L     L R  ++  ERD SDGW
Sbjct: 58  GASSWGNL-FGLVLKRRKNEAVERDSSDGW 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,550,812
Number of Sequences: 37544
Number of extensions: 138396
Number of successful extensions: 305
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)