Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_J11
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068708-5|AAK68200.1|  628|Caenorhabditis elegans P granule abn...    31   0.63 
AF068708-4|AAC17755.1|  693|Caenorhabditis elegans P granule abn...    31   0.63 
AB120729-1|BAC87886.1|  693|Caenorhabditis elegans PGL-3 protein.      31   0.63 
CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AF068708-5|AAK68200.1|  628|Caenorhabditis elegans P granule
           abnormality protein 3,isoform b protein.
          Length = 628

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 419 GCFRRGSFAWGRLGHRFALGRFDSDIXERDRSDGWHGYRG 538
           G   RGS+  GR G R   G +  D       DG  GYRG
Sbjct: 558 GTSGRGSYGGGRGGDRGGRGAYGGDRGRGGSGDGSRGYRG 597


>AF068708-4|AAC17755.1|  693|Caenorhabditis elegans P granule
           abnormality protein 3,isoform a protein.
          Length = 693

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 419 GCFRRGSFAWGRLGHRFALGRFDSDIXERDRSDGWHGYRG 538
           G   RGS+  GR G R   G +  D       DG  GYRG
Sbjct: 623 GTSGRGSYGGGRGGDRGGRGAYGGDRGRGGSGDGSRGYRG 662


>AB120729-1|BAC87886.1|  693|Caenorhabditis elegans PGL-3 protein.
          Length = 693

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 419 GCFRRGSFAWGRLGHRFALGRFDSDIXERDRSDGWHGYRG 538
           G   RGS+  GR G R   G +  D       DG  GYRG
Sbjct: 623 GTSGRGSYGGGRGGDRGGRGAYGGDRGRGGSGDGSRGYRG 662


>CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical
            protein C42C1.4a protein.
          Length = 1259

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 165  QYCTKQCNFVYTFGRLLRFFDFXSTRXRXXEXXTMKRRK 49
            ++C++Q +   T  R++R F F S R    E  + K++K
Sbjct: 1054 KFCSRQSSKNETSDRMMRVFQFVSERVAEFEEDSEKQKK 1092


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,848,843
Number of Sequences: 27780
Number of extensions: 122153
Number of successful extensions: 322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)