Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_J07
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...   180   1e-46
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    28   1.5  
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    27   3.5  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   6.1  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    26   6.1  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   6.1  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   8.0  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score =  180 bits (439), Expect = 1e-46
 Identities = 94/163 (57%), Positives = 113/163 (69%), Gaps = 2/163 (1%)
 Frame = -2

Query: 706 LFSXYQAIACAEANVTLISPFVGRILDWYVEHTKKTYEGKEDPGVVSVTKIYNYYKKFGY 527
           LFS  QA+ACAEANVTLISPFVGRILD+Y     + Y  +EDPGVVSV+ I+NYYKKFGY
Sbjct: 158 LFSFVQAVACAEANVTLISPFVGRILDFYKAKNNRDYTAQEDPGVVSVSNIFNYYKKFGY 217

Query: 526 KTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASSXXXXXXXXXXXXXXLNDIEKIS- 350
           KT VMGASFRN GEI+ELAG D LTISP LL++L +S                ++EK+S 
Sbjct: 218 KTIVMGASFRNVGEIKELAGVDFLTISPALLEQLNNSTDAVPKKLDASKASSLNLEKVSY 277

Query: 349 LT-EPEFRWHLNEDQMATDKLSDGIRRFAADTRKLESLIKTLL 224
           LT EP+FR+  N D+MA  KLS GI  FA D   L +++K  L
Sbjct: 278 LTDEPKFRFDFNNDEMAVVKLSTGIAAFAKDADTLRTILKAKL 320


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +2

Query: 152 ENVFINHSFTYHISISKVNRLLISKKRFDERFQLPSISSKSSYTI*EFVSSHL 310
           EN+ I HSF  H+S + +   + + + F ++F+LP  + K    + +F   ++
Sbjct: 760 ENIAIMHSFVDHMSFNDI-PFVNALRSFLQKFRLPGEAQKIDRFMLKFAEKYI 811


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -2

Query: 361 EKISLTEPEFRWHLNEDQMA-----TDKLSDGIRRFAADTRKL 248
           E++ L +PE  WH   D++A        L+  + +FA D + L
Sbjct: 217 EELGLLQPEIAWHTERDRIAEAGCFLGMLTGTLAKFATDIKLL 259


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
 Frame = -2

Query: 352  SLTEPEFRWHLNEDQMATDKLSDGIRRFA--------ADTRKLESLIKTLLANK 215
            +L +PEF   LNEDQ+   K       ++          T  + SLI++LLA K
Sbjct: 923  ALIDPEFLKCLNEDQITALKKCHAAEHYSLILGMPGTGKTTTISSLIRSLLAKK 976


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 613 HTKKTYEGKEDPGVVSVTKIYNYYKKFGYK 524
           HT  T EG+E+ G VS T + + ++    K
Sbjct: 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLK 330


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 345 VSDIFSMSFKAANFGSRTFFSG-LSLLAN 428
           +SDI S S K AN  S+  FSG L+  AN
Sbjct: 173 LSDISSSSMKKANNSSKPLFSGKLTFKAN 201


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 559 KIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASS 416
           +I+    + G+   + GA    +G I  + G D+L   P+L+  L +S
Sbjct: 701 EIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNS 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,931
Number of Sequences: 5004
Number of extensions: 55402
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)