Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_J07
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...    68   6e-12
01_06_0519 - 29993977-29994182,29994572-29994632                       29   4.8  

>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
 Frame = -2

Query: 706 LFSXYQAIACAEANVTLISPFVGRILDWYVEHT-----KKTYEGKEDPGVVSVTKIYNYY 542
           ++S  QA A A+A  +++  FVGR+ DW   H+      +  +  ED G+    K+Y Y 
Sbjct: 222 VYSFAQAAAAAQAGASVVQIFVGRVRDWARTHSGDPEIDEALKKGEDAGLALAKKVYAYI 281

Query: 541 KKFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASS 416
            K GYKT++M A+ RN  ++  L G D +    K+LQ L  S
Sbjct: 282 HKNGYKTKLMAAAIRNKQDVFSLLGIDYIIAPLKILQSLEES 323


>01_06_0519 - 29993977-29994182,29994572-29994632
          Length = 88

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 333 NSGSVSDIFSMSFKAANFGSRTFFSGLSLLANSCSNLGLI 452
           NSG ++D+ +   +    G+R F S L + +N  SNL ++
Sbjct: 32  NSGRITDVGARGPEKGEAGARGFLSPLPVSSNPDSNLSMV 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,541,760
Number of Sequences: 37544
Number of extensions: 305541
Number of successful extensions: 693
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)