Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_J06
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|... 128 5e-31
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 1.9
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 27 1.9
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 27 2.5
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 26 5.7
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 5.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 5.7
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 7.6
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 7.6
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 25 10.0
>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
3|||Manual
Length = 109
Score = 128 bits (310), Expect = 5e-31
Identities = 54/76 (71%), Positives = 64/76 (84%)
Frame = -3
Query: 658 GNAENGKXIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWN 479
G+ + G +F RCAQCHTVE GG +KVGPNLHG FGRKTGQA GFSY++AN+ KGITW+
Sbjct: 6 GDEKKGASLFKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGITWD 65
Query: 478 DDTLFEYLENPKKYIP 431
++TLF YLENPKKYIP
Sbjct: 66 EETLFAYLENPKKYIP 81
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = -1
Query: 456 LRIPRNTSPGTKMVFAGLKKANERADLIAYLKSAT 352
L P+ PGTKM FAG KK +R ++I YLK AT
Sbjct: 73 LENPKKYIPGTKMAFAGFKKPADRNNVITYLKKAT 107
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +1
Query: 97 SQHCQESINYITQYIMYQVHNMYSQTTTAND 189
S CQES+ + +Y ++ + ++ +T++AN+
Sbjct: 1152 SNLCQESVALVERYCVHTLEYVFQKTSSANE 1182
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 413 LLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGIYFL 282
L +R S+++ + SNLL N +++N SIF + Y L
Sbjct: 327 LQSKKRPQSIMSYMGHSNLLERNLALMKNENGSIFSSAGDDYVL 370
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 79 NLTFNHSQHCQESINYITQYIM---YQVHNMYSQTTTA 183
N+++ Q C E Y I+ +Q HN+Y+ TT A
Sbjct: 234 NVSYRSCQKCMEHFLYYGCLIIADIFQFHNIYAMTTNA 271
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 492 PLALLASEYENPAAWPVFRPKNP 560
PL LL + +++PA W V + NP
Sbjct: 270 PLELLKTVFQSPAPWDVHQLYNP 292
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -2
Query: 368 ISNLLPSNFKVIENSIRSIFHNISGIYFL 282
+S+L + F+ I+N +SI++ GI+F+
Sbjct: 165 LSSLAVNEFRTIQNISKSIWYTRLGIFFI 193
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 376 KVSTLICLLESSKHHLGSRGCISWDSQDIQRECRHS 483
++ T IC E ++ G+ IS+D Q IQ HS
Sbjct: 1934 QIGTYICFDEFNRLDSGTLSAISYDIQRIQSLVSHS 1969
>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 144
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 486 HGMTTLSLNILRIPRNTSPGTKMVFAGLKKANERADLIAYLKSATK 349
H + LSL +L RN S GTK++ + A E Y+K + K
Sbjct: 69 HKIQILSLAVLPAYRNRSIGTKLLEYACETAAEGKAKEIYIKLSPK 114
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 567 FGPTLCLPPASTVWHWAHRCTKIXFPFSAFP 659
+GP L + PAST+ +W T+ P
Sbjct: 891 WGPFLVIAPASTLHNWQQEITRFVPKLKCIP 921
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 556 FFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLEN 449
FFG +TG A F+Y + +AK +N + LEN
Sbjct: 56 FFGSQTGTAEDFAYRFSTEAKA-NFNLTNMVFDLEN 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,476
Number of Sequences: 5004
Number of extensions: 59511
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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