Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_J05
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14...    50   2e-06
05_01_0021 - 148084-148191,148387-148488,148641-148727,148845-14...    45   5e-05
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177...    30   2.1  
12_02_1219 + 27096477-27096590,27096704-27097078                       29   4.8  
05_04_0181 + 18799445-18799593,18801112-18801163,18801964-188019...    28   6.3  
03_05_0630 + 26260159-26260272,26260520-26260894                       28   6.3  

>01_01_0020 +
           147147-147313,148450-148548,148634-148742,148856-148927,
           149056-149061,150811-150915,151048-151539,151629-152025,
           152178-153646,154010-154450,154543-155214
          Length = 1342

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 28/103 (27%), Positives = 53/103 (51%)
 Frame = -3

Query: 706 VKYTLFNVGSAPAVEVKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYG 527
           V   L+N GSA A +V + D+ +  + F +V G+++  ++R+ P    SH   + +   G
Sbjct: 46  VSLDLYNQGSATAYDVSINDDTWPKEAFELVSGEMSKTLERLDPGVTASHAFVLETKVQG 105

Query: 526 YFNFSSAEVTYKASEDATDVQYSISSAPGEGAIVAFKDYDRKF 398
            F  S A +TY+    A  +Q + S+      ++A +  ++KF
Sbjct: 106 RFQGSPAVITYRVPTKAA-LQEAYSTPILALDVLAERPPEKKF 147


>05_01_0021 -
           148084-148191,148387-148488,148641-148727,148845-148979,
           149109-149324,149772-150043,151346-151394,151521-151526,
           151657-151728,152077-152185,152272-152370,153186-153364
          Length = 477

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
 Frame = -3

Query: 706 VKYTLFNVGSAPAVEVKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYG 527
           V   L+N GSA A +V L D+ +  + F ++ G  +  ++++ P    SH   + +   G
Sbjct: 50  VTLNLYNQGSATAYDVSLNDDSWPQEAFQLISGTTSKIVEKLDPGATASHNFILETKVQG 109

Query: 526 YFNFSSAEVTYKA-SEDATDVQYSISSAPGEGAIVAFKDYDRKF 398
            F  S A +TY+  ++ A    YS    P +  I+A +   +KF
Sbjct: 110 KFQGSPAIITYRVPTKAALQEAYSTPMFPLD--ILAERPPQQKF 151


>09_04_0736 -
           19815427-19815642,19815782-19816903,19817006-19817707,
           19817808-19817855,19817959-19818201,19819035-19819391
          Length = 895

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 286 VLKASHIC-SLMSTRGQMEWLGTGGS*LRMPPNRGYARRTFYHNL*RLRWL 435
           VL    +C     +RG+ EWL TG    R  P +GY  R    N   + W+
Sbjct: 183 VLGGQELCVDFQRSRGRAEWLETGSFNGRTGPAKGYGVRNRESNPTNVLWV 233


>12_02_1219 + 27096477-27096590,27096704-27097078
          Length = 162

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 285 GFESFS--YLLFDEYQRPNGMARDGRVITANAAQSR 386
           GF +FS    + D  +  NG   DGR IT N AQSR
Sbjct: 52  GFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSR 87


>05_04_0181 +
           18799445-18799593,18801112-18801163,18801964-18801999,
           18802098-18802233,18802313-18802512
          Length = 190

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 613 GGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTY 494
           GG  TA+ +    Q +    +T  +  YGY NFS  EV +
Sbjct: 150 GGSSTAQHEIGPSQLDEPPPITQPTQDYGYINFSGVEVAH 189


>03_05_0630 + 26260159-26260272,26260520-26260894
          Length = 162

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 285 GFESFS--YLLFDEYQRPNGMARDGRVITANAAQSR 386
           GF +FS    + D  +  NG   DGR IT N AQSR
Sbjct: 52  GFVTFSSEQSMRDAIEGMNGKELDGRNITVNEAQSR 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,355,093
Number of Sequences: 37544
Number of extensions: 361391
Number of successful extensions: 887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)