Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_J05
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical pr...    79   3e-15
Z68879-2|CAA93083.1|  182|Caenorhabditis elegans Hypothetical pr...    38   0.005
AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical
           protein T04G9.5 protein.
          Length = 188

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 39/121 (32%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
 Frame = -3

Query: 706 VKYTLFNVGSAPAVEVKLVD-NGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKY 530
           ++Y L+NVG  PA +V + D + F  + F +V G L    ++I   +NV+H V +R   +
Sbjct: 46  LEYGLYNVGDKPAQKVTIDDRHSFPTNSFDIVKGLLFVHFEQIPAGSNVTHSVVIRPRAF 105

Query: 529 GYFNFSSAEVTYKASEDATDVQYSISSAPGEGAIVAFKDYDRKFSSHILDWAAFAVMTLP 350
           G+FN+++A+VTY    +   V  ++++ PGEG I   ++YDR+F+     +  F ++  P
Sbjct: 106 GFFNYTAAQVTYYTDNENHHV--TLTNTPGEGYIYRQREYDRRFAPKYTYFLVFFLIVAP 163

Query: 349 S 347
           +
Sbjct: 164 T 164


>Z68879-2|CAA93083.1|  182|Caenorhabditis elegans Hypothetical
           protein K08F4.3 protein.
          Length = 182

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 3/131 (2%)
 Frame = -3

Query: 703 KYTLFNVGSAPAVEVKLVD-NGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYG 527
           +Y + N+G +PA++V+L D   F  D F ++ G  TA    I   + + H + V      
Sbjct: 40  EYQIINIGLSPALKVELSDLKSFPTDRFEILKGSATASFPVIPANSTIYHHIVVIPRVPQ 99

Query: 526 YFNFSSAEVTYKASEDATDVQYSISSAPGEGAIVAFKDYD-RKFSS-HILDWAAFAVMTL 353
                   V Y  SE     + S  S    G    F +   RK    +   +  F  +  
Sbjct: 100 AIEDHDVTVNYTDSETGKRARTSTVSYDKRGYTHFFAETAMRKVEGVNCTHFLGFGAIAF 159

Query: 352 PSLAIPFGLWY 320
           P  AIP  L++
Sbjct: 160 PLTAIPAILYW 170


>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 679 SAPAVEVKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSH 557
           S  A+ V L  NG++  VF V GGQ    + R++    +SH
Sbjct: 633 SGLAILVVLAQNGYNFGVFKVFGGQTLVVLSRLSFGVYLSH 673


>Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical
           protein K02E2.8a protein.
          Length = 188

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 576 GAILSISAVSCPPTTVNTSGWKPLSTSFTST 668
           G I + + +S P TTV  +   P+ST+ T+T
Sbjct: 26  GTITTTTTISAPTTTVPITTTNPVSTTTTTT 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,096,030
Number of Sequences: 27780
Number of extensions: 327824
Number of successful extensions: 799
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)