Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_J02
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         31   0.13 
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    30   0.31 
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    28   1.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   3.8  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    27   3.8  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   5.0  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   8.8  

>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 41  TFWYTKLVQLNCFGSFLCTFCSIVNYSK 124
           TF   KLV+ NCF  F+ +F S++ Y K
Sbjct: 29  TFSILKLVEYNCFPGFISSFHSLLTYRK 56


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +1

Query: 388 VFGLCLLFSTSSDKLGLPLFLFIDNPHMHKLFPTSNL*SFGFIGV--GICCCSPTLLYNN 561
           + GL +LF  S +      FL   +P+   L   ++  +FG IG   GI  C  ++L   
Sbjct: 17  IVGLYMLFHNSGESFDFGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGGA 76

Query: 562 QQLTRVTSR 588
            +  R+ ++
Sbjct: 77  VKAPRIKTK 85


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +1

Query: 307 LHRCLF*PQTGKF----SNPSRLTSRGGRIDVFGLCLLFSTS 420
           L RC+F      F    S+P+R   R  +ID+  L L+FSTS
Sbjct: 195 LSRCIFQGLFSTFFHRNSSPNRSLPRSRKIDLLKLLLIFSTS 236


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -1

Query: 329 GQKRQRCKYPGCKGNTFISCDKCCVELCLNKCNNCFRS 216
           G    +C +   KG  F  C  C V+     C  CFR+
Sbjct: 90  GTCESKCGHIFRKGEVFYRCKTCSVDSNSALCVKCFRA 127


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +2

Query: 392 LASVFCFQLHQINLVYLSFCLLITH---ICTNFSLLQICSP-SVSLGLVYAAAL 541
           +AS   F L  +    L +  LI     IC + S+ +ICS    S GL YAAA+
Sbjct: 84  VASTLVFGLWYVGYPGLLWAWLIAMFFLICVSMSMAEICSAMPTSGGLYYAAAV 137


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 23  TLSLNYTFWYTKLVQLNCFGSFLC 94
           T++ N  +W+T  + L  F S++C
Sbjct: 442 TINPNEPYWFTYGINLRAFASYIC 465


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 234 TFIEAKFYATFVARYECISFATRIFAS 314
           T+ E+ F  +F +RY  +SFA  I AS
Sbjct: 27  TYDESLFIKSFSSRYSYVSFAFEIGAS 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,573
Number of Sequences: 5004
Number of extensions: 68826
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)