Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_J02
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr...    31   0.88 
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    29   4.7  
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    29   4.7  
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    28   6.2  

>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical
           protein C04A11.3 protein.
          Length = 1228

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 551 RRVGEQQHIPTPMKPKDYKFEVGKSLCICGLSINKKRGRPSLSDEVENKRQRPNTSILP- 375
           RR GEQ+ +P P  P DY+    ++     + + K   +P  +       Q+ N+++ P 
Sbjct: 730 RRNGEQK-VPPPEPPVDYEGNAKENAAPSPVPVPKISQKPVPTPSTSTDVQKTNSNVAPR 788

Query: 374 PRDVRRDG 351
           P   R+DG
Sbjct: 789 PLGGRKDG 796


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical
           protein B0244.6 protein.
          Length = 982

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = -3

Query: 327 SKKTTMQISWLQRKYIHILRQMLRRTLPQ 241
           SKK T Q+ W+++  + ++R++ +R+ P+
Sbjct: 341 SKKATDQVKWMRKSCVGLVRKVTKRSNPE 369


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
           protein F07G11.9 protein.
          Length = 2025

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 578 TLVNCWLLYRRVGEQQHIPTPMKPKDYKFEVGKSLCICGLSINK 447
           T  N W   +R+ +QQ +    +    K EVGK +C+ G +IN+
Sbjct: 409 TCFNIWTS-QRMTQQQFMDLNKRLDCDKLEVGKEVCVAGENINQ 451


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -1

Query: 332 WGQKRQRCKYPGCKGNTFISCDKCCVELCLNKCNNCFRSF 213
           W  + +RC +    GN   S   C     L KC  C R++
Sbjct: 609 WCSRCRRCNHKAASGNDLTSQGLCFPCASLRKCPRCERNY 648


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -1

Query: 332 WGQKRQRCKYPGCKGNTFISCDKCCVELCLNKCNNCFRSF 213
           W  + +RC +    GN   S   C     L KC  C R++
Sbjct: 609 WCSRCRRCNHKAASGNDLTSQGLCFPCASLRKCPRCERNY 648


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 422 QINLVYLSFCLLITHICTNFSLLQICSPSVSLGLVYAAALRLFCT 556
           QINL Y     ++T I  N      CS +V LGLV +  ++ FCT
Sbjct: 400 QINLNYY----ILTQIFRNLPSRIQCSEAVRLGLVRSTEIQGFCT 440


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 422 QINLVYLSFCLLITHICTNFSLLQICSPSVSLGLVYAAALRLFCT 556
           QINL Y     ++T I  N      CS +V LGLV +  ++ FCT
Sbjct: 318 QINLNYY----ILTQIFRNLPSRIQCSEAVRLGLVRSTEIQGFCT 358


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 461 LSINKKRGRPSLSDEVENKRQRPNTS 384
           +S+N+K G  SLSDEV       NTS
Sbjct: 778 ISLNRKHGNSSLSDEVLEYDSHDNTS 803


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,414,530
Number of Sequences: 27780
Number of extensions: 385127
Number of successful extensions: 1134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)