Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_J02
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.58 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.58 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   4.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 327 SKKTTMQISWLQRKYIHILRQMLRRTLPQ 241
           S +T     W++R +IHIL ++L    PQ
Sbjct: 335 SPQTHKMAPWVKRVFIHILPRLLVMRRPQ 363


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 327 SKKTTMQISWLQRKYIHILRQMLRRTLPQ 241
           S +T     W++R +IHIL ++L    PQ
Sbjct: 335 SPQTHKMAPWVKRVFIHILPRLLVMRRPQ 363


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 327 SKKTTMQISWLQRKYIHILRQML 259
           S +T +   W++R +IH+L ++L
Sbjct: 331 SPQTHVMAPWVRRVFIHVLPRLL 353


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 506 KDYKFEVGKSLCICGLSINKKRGRPSLSDEVENKRQRPNTSILPPRD 366
           K+Y F+V +      ++I +  G PS  + V NK+ +    + P  D
Sbjct: 69  KNYPFDVDRWRDKTFVTIERNNGVPSSLNVVTNKKGKGGPLLRPYPD 115


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 603 PQVPFSLKNF 632
           PQVP+++KNF
Sbjct: 143 PQVPYTVKNF 152


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 355 MGLRIFLFGVKKDNDANILVAKEIHSYLATNVA*NFASINVTIVL 221
           + L +FL  V K      LV   I  YL      N  SI VT+++
Sbjct: 273 LSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVII 317


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 599 FYHLLDVTLVNCW 561
           F++L+D   V CW
Sbjct: 329 FFNLIDQNAVGCW 341


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 346 RIFLFGVKKDNDANILVAKEIHSYLATNVA*NFASINVT 230
           ++F   VKKD D  + V KE    L T    ++ + N T
Sbjct: 693 KLFAKKVKKDKDIILNVPKESTQSLTTTGNVSYLTTNNT 731


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,837
Number of Sequences: 438
Number of extensions: 4444
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)