Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_I23
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    26   2.3  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   2.3  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   7.0  

>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = +3

Query: 213 NFRDLVPSLXELAVQAIFSKPQPFIYACRPYFKSIELLNIFSSAHTTDSSAGR 371
           NF  L+PS  +++   I  K   F   C P++   +   + ++ +    S G+
Sbjct: 2   NFYSLLPSRHDVSADNITEKFCQFCLCCNPWYAGADTRQLANAFNMIPKSEGQ 54


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 317 RTSQYFQLSTYYRFIGRPNS 376
           RT QYF L+ +Y+F+   N+
Sbjct: 151 RTGQYFNLARWYKFMDSQNA 170


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 76  FTLGSSGLITT*VPLYLLLSPSFFT 150
           F LG   L+ T  P+Y+LLS  + T
Sbjct: 70  FNLGYGWLLLTKYPVYVLLSTYYLT 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,399,852
Number of Sequences: 5004
Number of extensions: 23797
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)