Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_I23
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-20|CAB76740.3|  728|Caenorhabditis elegans Hypothetical...    27   4.5  
AF068719-4|AAC17780.1|  294|Caenorhabditis elegans Hypothetical ...    26   7.9  

>AL110477-20|CAB76740.3|  728|Caenorhabditis elegans Hypothetical
           protein Y113G7B.18 protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 171 CSWSIQLREER--WRQ*KVQGYLCGD 100
           C +  +LRE R  WR  KV  Y+CGD
Sbjct: 274 CGFLRELREMREIWRVRKVGDYICGD 299


>AF068719-4|AAC17780.1|  294|Caenorhabditis elegans Hypothetical
           protein H14N18.2 protein.
          Length = 294

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 319 SIDLK*GLQAYINGCGFEKIAWTANSXRDGTRSLKFLP 206
           +I+L   L  +IN C ++++    +S RDG     FLP
Sbjct: 54  NIELFGSLPLFINQCSYKQLRSYFHSIRDGQHLSIFLP 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,595,656
Number of Sequences: 27780
Number of extensions: 127365
Number of successful extensions: 305
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)