Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_I19
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   1.8  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    27   3.2  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    26   4.2  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   4.2  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    26   5.5  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    25   7.3  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   7.3  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   7.3  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   9.7  

>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 116 SISILSKGSNELIFHSIHGKCDHLNNFHHAHIVETHD 6
           +I  L KG ++   H      DH N+ HH H   +HD
Sbjct: 2   AIPFLHKGGSDDSTHHHTHDYDHHNHDHHGHDHHSHD 38


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 369 LHYILMCFFLPK*INSIENNREIREPLC-VFAYFVETY 479
           + Y+L C FL + ++  E NR++ E +   F +++  Y
Sbjct: 330 IFYLLRCGFLKEAVDFTEENRDLFEKVAEKFPFYINAY 367


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 122 QNSISILSKGSNELIFHSIHGKCDHLNNFHHAHIVETHD 6
           Q  I +L + +N L   +I    D LNNF    +  THD
Sbjct: 730 QPHILLLDEPTNALDIDTIDALADALNNFDGGVVFITHD 768


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 221 VNIKNIELDLSMHLSDYYKYSVQNRNNINSKFKQNSISILSKGSNELI 78
           V +K++E D+S  L  Y +   +N NN+  K   ++I IL    +E++
Sbjct: 141 VGLKDLESDISTALKSYLQSLCENGNNL-VKTCIDTIPILDNKVSEIL 187


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = -1

Query: 236 KCIYNVNIKNIELDLSMHLSDYYKYSVQNRNNINSKFKQNSISILSKGSNELIFHSIHGK 57
           K    +N+  + L+ + ++  Y  Y +    NINS  K++ +SILS+   + +   I G 
Sbjct: 141 KLFPGINVSVLTLNSNFYVPVYRDYLMAL--NINSVSKKSCVSILSRKPGDSVLIVIGGA 198

Query: 56  CDHL 45
            + L
Sbjct: 199 QESL 202


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 257 SELNIVLKCIYNVNIKNIELDLSMHLSDYYKYSVQNRNNINSKFKQ 120
           S  N++ +   N+  K  +L L     D  KY V+N++   S+F++
Sbjct: 328 SRTNLMKQLQVNIEEKESQLQLLKEKRDSLKYQVENQDISISEFEK 373


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 236 KCIYNVNIKNIELDLSMHLSDYYKYSVQNRNNINSKFKQNSIS 108
           KCI N      E      LS++ KY    + N  SKFK + I+
Sbjct: 334 KCIINPYEFGFETGNYYTLSNFEKYCDNFKKNYFSKFKDSEIT 376


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 185 ACLNLIQYFLYLHCKCISKRYSILNIY--VTEAINL 286
           +C   +++FLY  C  I+  +   NIY   T A NL
Sbjct: 239 SCQKCMEHFLYYGCLIIADIFQFHNIYAMTTNAPNL 274


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -1

Query: 224 NVNIKNIELDLSMHLSDYYKYSVQNRNNINSKFKQNSISILSKGSNELIFHSI 66
           NV +K ++ D +      Y  S  N NN++  F+    +I+ + + ELI  SI
Sbjct: 564 NVKLKGVQNDHA------YWSSASNPNNVSGAFRFFPHTIIFRTNKELILQSI 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,953
Number of Sequences: 5004
Number of extensions: 49634
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)