Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_I19
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039711-5|AAB96708.1|  430|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    27   8.9  

>AF039711-5|AAB96708.1|  430|Caenorhabditis elegans Hypothetical
           protein F49D11.2 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = -1

Query: 218 NIKNIELDLSMHLSDYYKYSVQNRNNINSKFKQNSIS---ILSKGSNELIFHSIHGKCDH 48
           ++KN++LD+S+   +++   + N ++++  + +N IS   +LS     +   S+      
Sbjct: 253 SLKNLKLDISLRKVEFFSPKMCNIDHLSITYHKNQISEKNLLSLNCETIKLWSVTTSSRS 312

Query: 47  LNNF 36
           LN F
Sbjct: 313 LNKF 316


>Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical
           protein ZK822.1 protein.
          Length = 913

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -1

Query: 395 KKTHENIMQ*RLNF*QEHIKILH*SMFPISVKKVN 291
           K  H+N ++   +  +EH++++H S+  I V ++N
Sbjct: 450 KDAHQNCLEKLESLQREHMRVIHSSLVEIGVDEIN 484


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
            ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 361  NLYCIIFSCVFFYLNKSIRSKTIER*ESRYVF 456
            N +   FSCVF YL K+  + TI+   +R +F
Sbjct: 2383 NAHTHYFSCVFLYLFKNSTNDTIQEQITRILF 2414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,272,806
Number of Sequences: 27780
Number of extensions: 263299
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)