Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_I17
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.5  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.8  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               21   7.7  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 160 TFFSNLAMVENK*RHKNSKYSCTSGYL 240
           +  +N+  +++  RHKNS  +  SGY+
Sbjct: 340 SLLANVLDIDDDIRHKNSAANPPSGYI 366


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 160 TFFSNLAMVENK*RHKNSKYSCTSGYL 240
           +  +N+  +++  RHKNS  +  SGY+
Sbjct: 340 SLLANVLDIDDDIRHKNSAANPPSGYI 366


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 160 TFFSNLAMVENK*RHKNSKYSCTSGYL 240
           +  +N+  +++  RHKNS  +  SGY+
Sbjct: 340 SLLANVLDIDDDIRHKNSAANPPSGYI 366


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 160 TFFSNLAMVENK*RHKNSKYSCTSGYL 240
           +  +N+  +++  RHKNS  +  SGY+
Sbjct: 340 SLLANVLDIDDDIRHKNSAANPPSGYI 366


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 160 TFFSNLAMVENK*RHKNSKYSCTSGYL 240
           +  +N+  +++  RHKNS  +  SGY+
Sbjct: 340 SLLANVLDIDDDIRHKNSAANPPSGYI 366


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 160 TFFSNLAMVENK*RHKNSKYSCTSGYL 240
           +  +N+  +++  RHKNS  +  SGY+
Sbjct: 340 SLLANVLDIDDDIRHKNSAANPPSGYI 366


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 160 TFFSNLAMVENK*RHKNSKYSCTSGYL 240
           +  +N+  +++  RHKNS  +  SGY+
Sbjct: 408 SLLANVLDIDDDIRHKNSAANPPSGYI 434


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 160 TFFSNLAMVENK*RHKNSKYSCTSGYL 240
           +  +N+  +++  RHKNS  +  SGY+
Sbjct: 408 SLLANVLDIDDDIRHKNSAANPPSGYI 434


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 346 RRKNTLTSLNSILPTIL 296
           RRK    ++N ILPT+L
Sbjct: 230 RRKTLFYTVNLILPTVL 246


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 504 FRKIYLS*FVNISIYL*VC*SITLLVHIFNKIARVKILXFFF 629
           F+KIY+S   N+SI        T +   ++    VKIL   F
Sbjct: 261 FKKIYMSRHENVSILYADIVGFTAISSTYSASELVKILNELF 302


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 206 RILSTLAPAATYTN-SIVYNLCVKTNRFAFFQDCRENAV*R 325
           + LSTLAP       +I+YN C +T       DC+  A+ R
Sbjct: 154 KYLSTLAPGKVLGELAILYN-CKRTATITAATDCQLWAIDR 193


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 233 ATYTNSIVYNLCVKTNRFAFFQDCR 307
           +T  N I+YN+     R AF + CR
Sbjct: 308 STTINPILYNVMSAKYRNAFKETCR 332


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 335 VFTSLFFFFIN*LELVFXFYIESE 406
           +F +  FFFI  + L+F ++ E++
Sbjct: 1   MFKNYHFFFILVITLIFLYFGEAD 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,641
Number of Sequences: 438
Number of extensions: 3396
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)