Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_I14
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    29   0.46 
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    26   4.2  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.8  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.8  

>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 369 RKYSNKIKIHNFFIFVCIFVCTLYLV 292
           RKY  K  +H  F+FV + +C+ Y +
Sbjct: 37  RKYFTKTHLHRLFVFVVLLLCSGYFL 62


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 319 TNKNKKIVYFNFITVFSIALCSLKILKLR--IETQYN*NYSKMTILFCYSVKKKPKKKIR 492
           TN +KK  Y  F+T   + LC L  L     I+ Q+   +  + + +      +P+   R
Sbjct: 12  TNSSKKNFYTTFLTPHKLTLCLLIELYAHRIIQPQHCVPFLDLVLGYFNPNDSQPQTLTR 71

Query: 493 LHD 501
           +HD
Sbjct: 72  IHD 74


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 446 YYFVILLKKNP---KKKFVCMIHCTLRQVCSEFIVSYKITVRVGNFNLG 583
           Y+F+I L  N     KK + +   T R +C + I   K+ +R    NLG
Sbjct: 456 YFFLIRLCLNRPFLSKKGLYVNDMTPRNICIDSIEDVKVLIRAYRENLG 504


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 449 YFVILLKKNPKKKFVCMIHCTLRQVCSE 532
           +FV    K P+ ++ C+I  ++R+ C E
Sbjct: 6   HFVASTVKKPRSRYGCLICRSMRKKCDE 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,140
Number of Sequences: 5004
Number of extensions: 46807
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)