Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_I07
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    37   0.003
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   2.8  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    27   3.7  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    26   6.4  

>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 5/148 (3%)
 Frame = -3

Query: 666 GKYLGVSKDGVVVGRSDAVGPMEQW-EPVWQDGKTAILS-SLNKFMSVTPD-DDSVIA-- 502
           GKY+  SK G +    +AVG  EQW       G  A  S S  K+++++ +  D  IA  
Sbjct: 107 GKYMSCSKSGDLYCTQEAVGSQEQWIAENLGSGFWAWKSVSTKKYLTLSREKQDQAIACV 166

Query: 501 KSVSAGENEYCIIRSNKAKEVNKAVLPAXXXXXXXXXXXXXVKKFQKFQDKKLRLNDGSV 322
                 E ++ I    +  + NK+ L                ++ +    +KL  ++   
Sbjct: 167 SDTVIPEAKWRIRVQTRFLKKNKSSL--------FDNPTIHSRQLESMAGRKLSTDEKKT 218

Query: 321 TELKRAKIEGNLHETLLDRRSKMKADRY 238
             LK+A  EG LHE LLD R   ++D+Y
Sbjct: 219 --LKKAFKEGVLHEALLDLRVSSRSDKY 244


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 451 FITPYYTVLILTGTDTL 501
           F+ PY+T+L+L  TDT+
Sbjct: 315 FVAPYWTLLLLKDTDTI 331


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = -3

Query: 672 RYGKYLGVSKDGVVVGRSDAVGPMEQWEPVWQDGKTAILSSLNKFMSVTPDD 517
           +YGK++G+S + ++  R+D    M++     +  K  I S + +   +TP +
Sbjct: 102 KYGKHIGLSSNWLIADRNDTQAIMKRLLDSLKKAKNPIASGI-RGQELTPQN 152


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 439 YFLGFITPYYTVLILT 486
           YFLG+++ YY V+I T
Sbjct: 208 YFLGYLSMYYEVVIFT 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,438
Number of Sequences: 5004
Number of extensions: 50061
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)