Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_I07
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479...    28   8.9  
02_03_0240 - 16739628-16740369,16740392-16740978                       28   8.9  

>07_01_0641 -
           4790704-4790720,4790824-4791296,4791707-4792023,
           4792094-4792423
          Length = 378

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 421 RQHCFIYFLGFITPYYTVLIL 483
           R++C+IYFLGF  PY  ++ L
Sbjct: 354 RENCYIYFLGF-HPYKDIVFL 373


>02_03_0240 - 16739628-16740369,16740392-16740978
          Length = 442

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 670 VWKILGGFKGWSGGGQI*CSRANGTVGACLAR 575
           V  I GGFK   GGG+     A+  + A LAR
Sbjct: 250 VLDIGGGFKAGGGGGESTFQEASAVISAALAR 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,270,743
Number of Sequences: 37544
Number of extensions: 292960
Number of successful extensions: 745
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)