Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_I06
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    28   1.1  
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1...    27   3.5  

>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 113 GRRFDWRXKKRGVXKRMHNFVEKSLSF 33
           G+  DWR K R V  ++H F+ K L++
Sbjct: 22  GKLNDWRSKGRTVAFKLHPFLRKGLAY 48


>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = +1

Query: 325 KKKCILILLLYFRLH-FVHLK-YLNYVLKRNTTKTTVK*QYY---FVILLKKNPKKNSFA 489
           K K I++++L  +L   +  K Y+ +VLK N + + +   YY   F+I L   P    F 
Sbjct: 43  KTKTIIVVILSGKLSDLIDFKSYIEFVLKTNNSYSAILISYYRCIFIISLFHRPLTIHFL 102

Query: 490 *FIVH-CDR 513
             + H C R
Sbjct: 103 TNLTHGCTR 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,778
Number of Sequences: 5004
Number of extensions: 45188
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)