Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_I06
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z79602-2|CAB01889.1|  380|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    27   9.9  

>AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical
           protein F54E2.5 protein.
          Length = 710

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -3

Query: 448 QNNIVILL*F*LYCVSIRSLSILSEQSAIENTVIKLKYTFFLFVFLFARCI*FYLEQN 275
           Q  I IL+ F +YC  I  ++ + + +  +N    LK + F+FV   +  I F + QN
Sbjct: 226 QIGIPILI-FGIYCAIISKIAYMKQSTLSKNETSILKQSIFVFVAFQSSSIVFLIAQN 282


>Z79602-2|CAB01889.1|  380|Caenorhabditis elegans Hypothetical
           protein K09E9.2 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/66 (31%), Positives = 28/66 (42%)
 Frame = +3

Query: 60  VHXLRNSSFLXSPIKTSATHVTRAISFD*LFHKYRKFLNKNYIFDGKL*EKNNIYIMAMI 239
           VH L N      P+K  A+H    +SF       + F  KNY  DGK+   N   IM   
Sbjct: 228 VHDLHN----LDPVKFDASHTVNHVSFG------KSFPGKNYPLDGKVNTDNRGGIMYQY 277

Query: 240 LLVLSP 257
            + + P
Sbjct: 278 YVKVVP 283


>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 331 FFLFVFLFARCI*FYLEQNAVRRCHGDSTSNIIAIIYI 218
           F++F++L  RCI FY +  +   C     +NI+ +I +
Sbjct: 22  FWVFIYLKVRCIRFYADFVSFTICFVGFFANIVHLIIL 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,397,923
Number of Sequences: 27780
Number of extensions: 251333
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)