Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_I05
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 297 1e-81
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 62 1e-10
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 46 4e-06
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 32 0.068
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 30 0.27
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 29 0.83
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 4.4
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 26 5.9
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 25 7.8
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 297 bits (729), Expect = 1e-81
Identities = 143/173 (82%), Positives = 158/173 (91%)
Frame = -3
Query: 686 GRIPXAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDAT 507
GRIP AVGYQPTLATDMG MQERITTTKKGSITSVQA+YVPADDLTDPAPATTFAHLDAT
Sbjct: 319 GRIPSAVGYQPTLATDMGAMQERITTTKKGSITSVQAVYVPADDLTDPAPATTFAHLDAT 378
Query: 506 TVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILG 327
TVLSR+I+ELGIYPAVDPLDS SR+MDP I+G EHYN+A VQ++LQ+YKSLQDIIAILG
Sbjct: 379 TVLSRSISELGIYPAVDPLDSKSRMMDPRILGEEHYNLAGSVQQMLQEYKSLQDIIAILG 438
Query: 326 MDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKIL 168
MDELSE DKLTV RARK+QRFLSQPF VAEVFTG G+LV L++TI+ F +IL
Sbjct: 439 MDELSEADKLTVERARKVQRFLSQPFAVAEVFTGIEGRLVSLKDTIRSFKEIL 491
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -1
Query: 163 GDYDHLPEVAFYMVGPIEEVVAKADTLAK 77
G +D LPE AFYMVG I++ V KA+ +A+
Sbjct: 493 GKHDSLPESAFYMVGSIDDAVKKAEKIAQ 521
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 61.7 bits (143), Expect = 1e-10
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Frame = -3
Query: 680 IPXAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDAT 507
+P GY + TD+ T+ ER + GSIT + + +P DD+T P P T +
Sbjct: 295 VPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQ 354
Query: 506 TVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDII 339
+ R + IYP ++ L S SR+M I +H +V+ + + + +
Sbjct: 355 IFVDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSNQLYAMYAIGRDAASMK 414
Query: 338 AILGMDELSEEDKLTVARARKIQR-FLSQ 255
+++G + LS+ED+L + K ++ F+SQ
Sbjct: 415 SVVGEEALSQEDRLALEFLGKFEKTFISQ 443
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 46.4 bits (105), Expect = 4e-06
Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 13/155 (8%)
Frame = -3
Query: 680 IPXAVGYQPTLATDMGTMQERI-------TTTKKGSITSVQAIYVPADDLTDPAPATTFA 522
+P GY L + + ER + ++G+++ V A+ P D +DP + T
Sbjct: 376 MPADSGYPAYLGAKLASFYERAGRARCLGSPDREGTVSIVGAVSPPGGDFSDPVTSATLG 435
Query: 521 HLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH----YNVARG-VQKILQDYK 357
+ L + +A+ +P+++ S S+ ++ E +N R +++I+Q
Sbjct: 436 IVQVFWGLDKKLAQRKHFPSINTSLSYSKYINALQPWYEERVPGFNTLRDQIKQIIQQED 495
Query: 356 SLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 255
S+ +II ++G LSE DK+T+ A I+ FL Q
Sbjct: 496 SMLEIIQLVGKSALSETDKVTLDIAGIIKNDFLQQ 530
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 32.3 bits (70), Expect = 0.068
Identities = 29/116 (25%), Positives = 48/116 (41%)
Frame = -3
Query: 599 GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPN 420
GS+T++ I D++ P + D L + GI PA++ S SR+
Sbjct: 347 GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVGLSVSRVGSAA 406
Query: 419 IIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQP 252
+ A VA ++ L Y+ + A G D L + T+ R ++ L QP
Sbjct: 407 QVKAMK-QVAGQIKLFLAQYREVAS-FAQFGSD-LDAGTRATLDRGLRLTELLKQP 459
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 30.3 bits (65), Expect = 0.27
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -3
Query: 584 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA--VDPLDSTSRIMDPNIIG 411
+ I VP D P F + SR +A G P+ V+P +S ++I+D I
Sbjct: 91 IAIIGVPFDTAVSHRPGARFGPKGIRSASSRQMAIRGFNPSLNVNPYESWAKILDCGDIP 150
Query: 410 AEHYNVARGVQKILQDYKSL 351
Y+ V+++ + Y L
Sbjct: 151 VSSYDNQLAVRQMTEGYIDL 170
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.83
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = -3
Query: 626 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 504
QE + +G+ T ++A+++P+ + P P+ + A +
Sbjct: 78 QEAVVLPSQGNFTQLEALFIPSKSIKAPTPSRLLREIAAVS 118
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 608 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 471
TK G++ + V + DPA A +L+ +V RA A LG+
Sbjct: 439 TKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGL 484
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = -1
Query: 430 WTLILLELSTTMLH------VEFRKFFRTTNPCRTLLLFW 329
WTL+ L T + H ++ FF +PC L FW
Sbjct: 489 WTLVNAPLITNLTHETITSLLDQEAFFHGNSPCALLANFW 528
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 199 SSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSS 324
S G P+ S CE N +R R T ++ SSD S+
Sbjct: 130 SGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAST 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,333
Number of Sequences: 5004
Number of extensions: 59893
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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