Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_I02
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 32 0.35
03_06_0334 + 33208266-33208481,33208789-33208940,33209141-332092... 31 1.1
04_01_0541 - 6998030-6998521,7000666-7000732,7001057-7001202 30 1.4
08_01_0312 + 2764744-2767390,2767632-2767990 29 3.2
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 29 4.3
01_01_0483 - 3550429-3551184 29 4.3
04_04_1681 + 35322992-35323765 28 5.6
11_06_0532 - 24726763-24727033,24729113-24729657 28 7.5
06_01_0468 - 3319777-3319779,3319901-3319999,3320547-3320682,332... 27 9.9
04_03_0672 + 18559984-18559986,18560096-18560569,18560666-185608... 27 9.9
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 27 9.9
>09_02_0450 +
9468495-9468528,9468947-9469062,9470031-9470858,
9470955-9471107,9471194-9471604
Length = 513
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 510 MSXNRFPLLKSLCITISLTVLS-*YGYISFVFCVSHSPAL 626
M N F LLK LCIT+S LS Y Y+S V + P+L
Sbjct: 332 MVPNTFLLLKYLCITLSAVTLSPSYDYLSLVSFLDACPSL 371
>03_06_0334 +
33208266-33208481,33208789-33208940,33209141-33209221,
33209371-33209491
Length = 189
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +3
Query: 129 PMPQATMPYWT*RFFS*SMGHTRGDPPSPRQVS 227
P P PY RFFS S+ +RG PSP+Q S
Sbjct: 51 PPPPPLTPY---RFFSSSVSESRGTSPSPKQES 80
>04_01_0541 - 6998030-6998521,7000666-7000732,7001057-7001202
Length = 234
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -3
Query: 629 DQSRRMGHAEHEGDISVSRQDSQGNRD-TQGLQ*GEPVXRHSSAVPRDSSGFSPERGSGV 453
++S H EG SRQ +Q R TQG G RH A S G S G GV
Sbjct: 111 ERSPAKPHGRKEGSGGASRQPAQAARGVTQG---GGGGRRHICAALARSGGVSAGGGDGV 167
Query: 452 SPTG 441
S +G
Sbjct: 168 SNSG 171
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 175 EKNRYVQYGIVAWGIGCGEDGTPGVYVDVSNLRTWIDDKVAGQGI 41
EK+ +G+V I G Y + +N+ W+ KVAG G+
Sbjct: 892 EKSDVYSFGVVLLEILTGRRSVEAEYGEGNNIVDWVRRKVAGGGV 936
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = -3
Query: 248 RGGGA---RQGHLPGGRGVAPR 192
RGGG R G PGGRGV PR
Sbjct: 37 RGGGRNGPRGGRFPGGRGVEPR 58
>01_01_0483 - 3550429-3551184
Length = 251
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 275 LPVALDVHVRGGGARQGHLPGGRGVAPRVPH 183
L A+ + GGG R G + GG G+AP PH
Sbjct: 162 LAAAVSAGMYGGGRRLGVIDGG-GIAPPSPH 191
>04_04_1681 + 35322992-35323765
Length = 257
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 322 RNTCQSQLRRTRLGRFFQLHSTFMCAGGEPDKDTCRGDGGSPLVC-PIDYEK 170
R++C S+L + GR S C + D+ CRG G+P C P Y K
Sbjct: 154 RDSCPSELSKKVNGRTVACRSA--CDVFDTDQYCCRGMYGNPSTCQPTFYSK 203
>11_06_0532 - 24726763-24727033,24729113-24729657
Length = 271
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 41 YPLXGDLVVDPGPQVRNVHVNSWSAVLSAADAPGYDAVLDIA 166
YPL G +VVDP ++ +H ++ A L + LD A
Sbjct: 87 YPLAGRIVVDPVSRLPELHCHNQGAELVVGEVDAALGSLDFA 128
>06_01_0468 -
3319777-3319779,3319901-3319999,3320547-3320682,
3320836-3320982,3321068-3321201
Length = 172
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 366 LPSFPNLSFPQPVAKHLTPAGARSLAGGRHATPTFGAESTGVSRNSR 506
LPSF +LS V++ A RSLAG R +F + TG +R
Sbjct: 37 LPSFHDLSMAGGVSRRWRRAVERSLAGRRRM--SFAGQRTGDDSTAR 81
>04_03_0672 +
18559984-18559986,18560096-18560569,18560666-18560836,
18561494-18561640
Length = 264
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 260 DVHVRGGGARQGHLPGGRGVAPRVPHRL*EESLCP 156
D H R ++Q + GG G APR P+R+ S P
Sbjct: 78 DPHRRHSLSQQREVGGGIGSAPRSPYRMVHGSASP 112
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 340 DVPVVDRNTCQSQLRRTRLG 281
+ PV+ R TC Q+RRT LG
Sbjct: 523 EAPVLRRGTCLEQVRRTDLG 542
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,605,372
Number of Sequences: 37544
Number of extensions: 350246
Number of successful extensions: 1334
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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