Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_I02
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    52   4e-09
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 52.4 bits (120), Expect = 4e-09
 Identities = 53/195 (27%), Positives = 81/195 (41%), Gaps = 5/195 (2%)
 Frame = -1

Query: 637 ELKIRAGEWDTQNTKEIYPYQDRTVKEIVIHKDFN---KGNLXY-DIALLFLETPVDSAP 470
           +L I  GE D  +  E       ++ +++IH  ++   K +    DIALL  E  +    
Sbjct: 212 KLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGD 271

Query: 469 NVGVACLPPAR-ERAPAGVRCFATGWGKDKFGKEGRYQVIMKKVDVPVVDRNTCQSQLRR 293
            VG ACLP      + AG      GWG   F   G    I++K  + ++ +  C      
Sbjct: 272 KVGPACLPFQHFLDSFAGSDVTVLGWGHTSF--NGMLSHILQKTTLNMLTQVECYKY--- 326

Query: 292 TRLGRFFQLHSTFMCAGGEPDKDTCRGDGGSPLVCPIDYEKNRYVQYGIVAWGIGCGEDG 113
                +  +    MCA  +  KD C+ D G P++      K R V  GI++WG  CG+  
Sbjct: 327 -----YGNIMVNAMCAYAK-GKDACQMDSGGPVLWQNPRTK-RLVNIGIISWGAECGK-- 377

Query: 112 TPGVYVDVSNLRTWI 68
            P     V +   WI
Sbjct: 378 YPNGNTKVGSYIDWI 392


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 195 RGDPPSPRQVSLSGSPP 245
           RG PP+P Q    G PP
Sbjct: 36  RGSPPNPSQGPPPGGPP 52



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 204 PPSPRQVSLSGSPP 245
           PP P   ++SG PP
Sbjct: 418 PPIPNMSNMSGMPP 431


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 484 VDSAPNVGVACLPPARERAPAG 419
           + SAP+   +  PPA+  A AG
Sbjct: 517 IASAPSSSTSSSPPAKGAAAAG 538


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,752
Number of Sequences: 438
Number of extensions: 3170
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)