Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_H20
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.86 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.86 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   1.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.1  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 90  SFQILANSIFTQFSAKARIFESTERSLSRNMFVS 191
           SF  +  ++ T+ +  ARIF+S  R+  R  ++S
Sbjct: 590 SFSAVYGALLTKTNRIARIFDSASRTAVRPRYIS 623


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 90  SFQILANSIFTQFSAKARIFESTERSLSRNMFVS 191
           SF  +  ++ T+ +  ARIF+S  R+  R  ++S
Sbjct: 680 SFSAVYGALLTKTNRIARIFDSASRTAVRPRYIS 713


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 87  FSFQILANSIFTQFSAKARIFESTERSLSRNMFVS 191
           F F ++  ++ T+ +  +RIF +++ S  R  F+S
Sbjct: 730 FCFTVVYAALLTKTNRISRIFNASKHSAKRPSFIS 764



 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 446 LRRTWRHLPYQLRCS*ALSCTFLHRSVVLVERPRRDFRR 562
           LR T   +   L  S  ++C F  +  +++ RP R+ R+
Sbjct: 877 LRITSMSVTISLSASVTIACLFSPKLYIILIRPERNVRQ 915


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 198 PDRSSANVLRETHGYGDVVSDDTSSQAVICVI 293
           PD   + VL++   + DVV      + VIC+I
Sbjct: 63  PDAMFSQVLKKAENFKDVVKIWVGPKLVICLI 94


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 706 TLKKQHKSLTQRLSQTPVSVAAPEPERT 623
           T ++QHK++   ++  PV  A   PE T
Sbjct: 277 TTEQQHKAMFLVVTAQPVHSAYKAPEET 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,951
Number of Sequences: 438
Number of extensions: 4402
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)