Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_H17
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 30 0.30
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.40
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 29 0.53
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 28 1.6
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 2.8
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 27 2.8
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 27 3.8
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 27 3.8
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 26 5.0
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce... 25 8.7
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 30.3 bits (65), Expect = 0.30
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 506 QYLHHNQISLSKTAWNLCNKMPFPSSPKQGRLIMTQ 613
Q L H+ +SL + + N+ + P P P+Q +I+T+
Sbjct: 233 QQLVHDSVSLRRPSSNIPAQKPIPPKPEQNEIIITK 268
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.9 bits (64), Expect = 0.40
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = -1
Query: 640 MGN*RRLSKLCHYQTALLGT*RKRHFITQIPCSFR*RNLIMM*ILEKYPTPETYLTLNSA 461
+G+ R +S + + T L+G P F L++ I+ KY +TY T +
Sbjct: 1106 LGHVRSMSGIGFFHTCLMGVFLGTTTYLLSPVDFANNPLLLFQIISKYKIKDTYATFQTL 1165
Query: 460 VYKAFRTVQPSTPTATFGRPCLE 392
Y +Q PT CLE
Sbjct: 1166 NY-----IQNQQPTKWPNLSCLE 1183
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 29.5 bits (63), Expect = 0.53
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 724 LLXLWVMKILQVTLRETKPLFTNWIQLKMGN*RRLSKLCHYQTALLG 584
LL LW + + L +T+PL T + K G R + +C Y A G
Sbjct: 103 LLFLWAIVMNMDALFQTQPLLTLVVHCKAGKGRTGTVICSYLVAFGG 149
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 160 NVNLTLTLGSPFTPSPVTIKVAPEGGSCSLPTLQQAEVTNKIS 288
N + ++++ P TPS TI P S LP+ A+ T IS
Sbjct: 183 NASASMSVPPPLTPSASTINDQPFSNSFDLPSQVIADGTGAIS 225
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Frame = -3
Query: 728 LFAGTMGHEDP---PGNFERNXASLYKLDSAKDGK----LEKIIETVSLS 600
L +G E+P PGNF + SLY++ + G+ E+++ET++ S
Sbjct: 1517 LLRTAVGGENPMALPGNFVNSITSLYEISESFSGETKQAYEQLVETMNKS 1566
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +1
Query: 349 RISPFLGLILSTHEPP---NTAAQRLPSVSMVVPSGMP 453
+ISPF+G+ ++TH+ +T R+ ++V +G+P
Sbjct: 596 KISPFIGIFINTHQRAVFISTDGGRICRPLIIVQNGLP 633
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 468 FKVKYVSGVGYFSSIYIIIKFRYRKLHGICVIKCLF 575
++++ + G G F+ +Y++ KL+ + IKC F
Sbjct: 32 YRIQKLLGEGGFAFVYLVQNVSNEKLYALKKIKCSF 67
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 355 SPFLGLILSTHEPPNTAAQRLPSVSMVVPSGMPCRL 462
S LGL+L T+ LP++S + PS MP +L
Sbjct: 442 SLLLGLVLDELVFSTTSTTPLPALSHLFPSNMPLQL 477
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 465 AQSTRHSG-RYNHRHRRQPLGGRVWRLMRAQDQS*KRRNPTKISNSR 328
+ S +++G R NHR R QP R W L+ + +R K +
Sbjct: 2 SSSFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKK 48
>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 575 EKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDF 471
E+ FY DSM F + K + VDT + + R++ ++
Sbjct: 321 EQLFYVMDSMGFEVLKHN-SVDTTYMGDKRSMLEW 354
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,644
Number of Sequences: 5004
Number of extensions: 69040
Number of successful extensions: 219
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -