Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_H17
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   4.6  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   4.6  
Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical
           protein F21F3.1 protein.
          Length = 350

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 24/87 (27%), Positives = 39/87 (44%)
 Frame = -3

Query: 599 NGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRSLQGIPDGTTIDTD 420
           +G  WD  EK+F   ++    +   + +     IS  + + D     L  +P G TID +
Sbjct: 79  SGRVWD--EKSFNDHETFNKDLGVIN-NKTIAIISREKKVIDEFGAGLFYMPHGLTIDNN 135

Query: 419 GNLWAAVFGGSCVLKINPKNGEILQKL 339
           G+ W    G   V KI+ K  +I+  L
Sbjct: 136 GDYWVTDVGSHQVHKIDAKTQKIVMSL 162


>Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical
           protein M163.5 protein.
          Length = 435

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = -3

Query: 635 KLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDFKQRSL 456
           +LEK  + + L  G  + L+  A +   + + +  K  + V+   + N  +  +    ++
Sbjct: 115 RLEKSCKQLELIRGSMFSLQVDANFSNCNKKPTTAKLPFSVEYFIVENESDFIETFSNAM 174

Query: 455 QGIPDGTTIDTDG 417
              PDG+  D DG
Sbjct: 175 YASPDGSLYDADG 187


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
 Frame = -3

Query: 686 FERNXASLYKLDSAKDGKLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDT 507
           F      LY+L+     +  K + +     G+ +D  ++  ++TD +  S    D D D 
Sbjct: 398 FVARREGLYRLNPKNPDEEVKKLASGEFIYGIDFDYGDRKIFWTDRLAHSAFSADVD-DE 456

Query: 506 GEISNPRNIFDFKQRSLQGI--PDGTTIDTDGNLWAAVFGGSCVLKINPKNGE 354
           GEIS        K+ SL+ +  P    +D   N    +  GS  + ++  +GE
Sbjct: 457 GEIS------QIKKLSLKSLVYPRCLAVDWITNTLYIIESGSRRIDVSSYDGE 503


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
 Frame = -3

Query: 686 FERNXASLYKLDSAKDGKLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDT 507
           F      LY+L+     +  K + +     G+ +D  ++  ++TD +  S    D D D 
Sbjct: 398 FVARREGLYRLNPKNPDEEVKKLASGEFIYGIDFDYGDRKIFWTDRLAHSAFSADVD-DE 456

Query: 506 GEISNPRNIFDFKQRSLQGI--PDGTTIDTDGNLWAAVFGGSCVLKINPKNGE 354
           GEIS        K+ SL+ +  P    +D   N    +  GS  + ++  +GE
Sbjct: 457 GEIS------QIKKLSLKSLVYPRCLAVDWITNTLYIIESGSRRIDVSSYDGE 503


>Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical protein
            R09E10.5 protein.
          Length = 1459

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 22/77 (28%), Positives = 32/77 (41%)
 Frame = -1

Query: 553  IPCSFR*RNLIMM*ILEKYPTPETYLTLNSAVYKAFRTVQPSTPTATFGRPCLEAHACSR 374
            IP S R   + +   LE+YP  +    L       +  VQP+  T   G   LEA    R
Sbjct: 894  IPQSVRTPEVRIQTRLERYPNRKVDFGLLGRYISQYELVQPTNATVITG-IALEATGTER 952

Query: 373  SILKTEKSYKN*QFPPN 323
             I+ T K  +  ++  N
Sbjct: 953  VIVMTRKDTRRFRYRTN 969


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,104,628
Number of Sequences: 27780
Number of extensions: 401315
Number of successful extensions: 1019
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)