Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_H14
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   3.4  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   5.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   5.9  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 197 NKNILKNIMILLFISFEILINNFRGLL 117
           N+N+L N + L  ++F+IL  N   L+
Sbjct: 383 NQNVLNNDLNLEHVNFQILGANVNDLI 409


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 477 PARDDLKKICHRPAE 521
           P+ +DLK+I ++P+E
Sbjct: 352 PSEEDLKRITNQPSE 366


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 81  KKHSKQRRFVNRK*STKIINQYFK*YKQ*NHNVF*N 188
           K+ S+ R+   R    KII+     YK  N+N + N
Sbjct: 64  KERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNN 99


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 81  KKHSKQRRFVNRK*STKIINQYFK*YKQ*NHNVF*N 188
           K+ S+ R+   R    KII+     YK  N+N + N
Sbjct: 297 KERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNN 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,768
Number of Sequences: 438
Number of extensions: 1962
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)