Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_H10
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97196-9|AAB52454.1|  141|Caenorhabditis elegans Hypothetical pr...    33   0.24 
AC006776-5|AAF60625.1|  358|Caenorhabditis elegans Serpentine re...    28   6.8  

>U97196-9|AAB52454.1|  141|Caenorhabditis elegans Hypothetical
           protein B0207.9 protein.
          Length = 141

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -3

Query: 572 KPCLQ*LVYVKENKLCIEIVISNLNVYCEVPLFV*LQA*IF*IKLYFSPFFIFIRKLTHV 393
           K C   ++ +K  ++  E+ I  L   C + L +     +F I  Y  P    IRK T +
Sbjct: 3   KACDADIINIKAERISKELAILYLTAGCNILLLILNITILFAIISYMKPAISEIRKQTFI 62

Query: 392 VLQCI 378
           ++ CI
Sbjct: 63  IMDCI 67


>AC006776-5|AAF60625.1|  358|Caenorhabditis elegans Serpentine
           receptor, class w protein90 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 112 YLLSNSKFAVFDIKXLLTLKESHFKK*ARNSDKSILKDTTIAVNV*MYC 258
           + +S     + D+   + LKE+ F+K A+N+   +L D+   VN  ++C
Sbjct: 280 FFISEFPLGIADLYTAIWLKEAQFRKLAQNT--VLLCDSLFTVNASIHC 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,992,844
Number of Sequences: 27780
Number of extensions: 215209
Number of successful extensions: 383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)