Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_H09
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 161 6e-41
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 127 1e-30
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 34 0.015
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 28 0.95
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 26 5.1
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 5.1
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 6.7
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 6.7
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 8.9
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 8.9
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 161 bits (392), Expect = 6e-41
Identities = 71/131 (54%), Positives = 101/131 (77%), Gaps = 1/131 (0%)
Frame = -1
Query: 612 AAKVMSQVKIMVRVMYSNPPLYGARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRA 433
AA++ SQ KI++R +YSNPP+ GAR+ IL+N L++QW G+V M++R+ +MR LR
Sbjct: 306 AARIESQTKILIRALYSNPPVNGARIANHILSNPALREQWAGEVVGMSERLKSMRKALRN 365
Query: 432 GIE-GAGNPHPWQHITDQIGMFCFTGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVN 256
+E N H W+HITDQIGMFC+TGL P+QV+ L K++H+YLTK+GRIS++G+++ NV
Sbjct: 366 ILEKDLKNKHSWKHITDQIGMFCYTGLNPQQVDVLAKQYHIYLTKNGRISISGLNTSNVR 425
Query: 255 YIAEAIHKVTS 223
Y AEAI+ VTS
Sbjct: 426 YFAEAINAVTS 436
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 127 bits (307), Expect = 1e-30
Identities = 59/128 (46%), Positives = 85/128 (66%)
Frame = -1
Query: 618 ATAAKVMSQVKIMVRVMYSNPPLYGARLVQEILTNAELKKQWLGDVKQMADRIITMRSQL 439
+T KV+SQ+ I+ R SNPP YGAR+ EIL + +L +W D+K M+ RII MR +L
Sbjct: 275 STKNKVLSQLCIVQRNTISNPPAYGARIAAEILNSPQLFAEWEQDLKTMSSRIIEMRKRL 334
Query: 438 RAGIEGAGNPHPWQHITDQIGMFCFTGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNV 259
R + P W HIT QIGMF FTGL P QV+ + +H+Y + +GRIS+AG+++ NV
Sbjct: 335 RDSLVALKTPGSWDHITQQIGMFSFTGLTPAQVQFCQERYHLYFSANGRISMAGLNNSNV 394
Query: 258 NYIAEAIH 235
++A+A +
Sbjct: 395 EHVAQAFN 402
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.015
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = -3
Query: 541 PPRAGDTHQRRTQ-KAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLL 365
P + D+HQ R+ ++ R R + H + + R+ + P ++ H R
Sbjct: 133 PHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYE 192
Query: 364 HRTQARAGRASDERVPRVPDERRTHFRRRHLLAKRE 257
R+ +R+ RA D + D+ R+H R+R RE
Sbjct: 193 ERS-SRSSRAHDYDYEDLRDDDRSHERKRSRSRPRE 227
Score = 28.3 bits (60), Expect = 0.95
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 466 PDHHDAEPAPRRHRGRRQPAP-LATHHRPDRHVLLHRTQARAGRASDERVP 317
P HH +PR G R P+P + R + R + R+ R+S R P
Sbjct: 113 PRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHP 163
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.3 bits (60), Expect = 0.95
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 540 RLVQEILTNAELKKQWLGDVKQMAD 466
+L+Q L +LKKQ+ GD++ +AD
Sbjct: 392 KLMQNELNKGQLKKQFKGDLRNLAD 416
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -1
Query: 303 KDGRISVAGISSQNVNYIAEAI 238
K+GRI+ G+S+ N++++ E I
Sbjct: 130 KEGRINKIGVSNYNIHHLEEII 151
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 156 EHSIYLKQ*LIKNPNLLKVFVNLF 85
E ++L Q L K+PN K+F NL+
Sbjct: 524 ERVVFLLQELAKSPNTPKLFFNLY 547
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/62 (19%), Positives = 27/62 (43%)
Frame = -3
Query: 430 HRGRRQPAPLATHHRPDRHVLLHRTQARAGRASDERVPRVPDERRTHFRRRHLLAKRELH 251
++ P P + H P L+H+++++ + + R +R L +EL+
Sbjct: 1253 NKREHHPKPFSLHQVPPPESLIHKSKSKFSKGNHHSTNGTQSIRGRGGKRGKPLRSKELN 1312
Query: 250 RR 245
R+
Sbjct: 1313 RK 1314
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 469 GPDHHDAEPAPRRHRGRRQPAP 404
G H P+PR R RR P+P
Sbjct: 342 GSLHRSRSPSPRSGRPRRSPSP 363
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Frame = -3
Query: 466 PDHHDA----EPAPRRHRGRRQPAPLATHHRPDRHV 371
P HH+ P P H+ P HH P H+
Sbjct: 198 PAHHEPGEHMPPPPMHHKPGEHMPPPPMHHEPGEHM 233
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -1
Query: 411 PHPWQHITDQIGMFCFTGLKPEQVERLTKEFHVYLTKDGRIS 286
P W H+ Q T + E + RL +EF + D R S
Sbjct: 655 PEVWDHVFRQAPKPKNTSISDEALARLCREFQYFYPFDIRAS 696
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,564
Number of Sequences: 5004
Number of extensions: 43305
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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