Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_H07
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 40 3e-04
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 40 3e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 39 8e-04
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 37 0.002
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 36 0.006
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 33 0.030
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 33 0.039
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 31 0.12
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 31 0.12
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 31 0.21
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 30 0.36
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 29 0.48
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 29 0.84
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 29 0.84
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom... 28 1.5
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 27 1.9
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 27 1.9
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 2.6
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 27 2.6
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 3.4
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 27 3.4
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 27 3.4
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 4.5
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 26 5.9
SPAC1556.06.2 |meu2|SPAC1556.06b, SPAC1556.06|sequence orphan|Sc... 26 5.9
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 5.9
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 25 7.8
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -2
Query: 429 FRCQLCPKGFKHPTSLTLHKDAH--AGKTQCPVCHRSFSRSYDMRSHLQRIHQGKQL 265
F C C K F +LT HK H A CP C R ++ H+QR H K +
Sbjct: 31 FPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDKSV 87
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = -2
Query: 432 KFRCQLCPKGFKHPTSLTLHKDAHAGKTQ--CPV--CHRSFSRSYDMRSHLQRIH 280
++RC C +GF P+SL +H +H G+ C C ++F+ +MR H QRIH
Sbjct: 467 RYRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRH-QRIH 520
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 38.7 bits (86), Expect = 8e-04
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 414 CPKGFKHPTSLTLHKDAHAGKT--QCPVCHRSFSRSYDMRSHLQRIHQGKQ 268
CPK F L H+ H C C+R+F+RS + H+Q++H KQ
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQ 83
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 414 CPKGFKHPTSLTLHKDAHAGKT--QCPVCHRSFSRSYDMRSHLQRIHQG 274
C K F +L H + H QC +C +SF+R +D R H +++H G
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRH-EQLHTG 624
Score = 33.1 bits (72), Expect = 0.039
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = -2
Query: 471 DLSDKNNPESDLAKFRCQLCPKGFKHPTSLTLHKDAHAG--KTQCPVCHRSFSRSYDMRS 298
+L N ++ F+C +C K F H+ H G C C++ F+R +
Sbjct: 586 NLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNR 645
Query: 297 HLQRIHQGKQLTIKIRYKNGDNVAPKQFT 211
H + + Q ++ + G V P + T
Sbjct: 646 HYK--SEVGQNCLRTATERGIQVPPSRKT 672
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 35.9 bits (79), Expect = 0.006
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = -2
Query: 492 TSTAAPEDLSDKNNPESDLAKFRCQLCPKGFKHPTSLTLHKDAHAGKTQ--C--PVCHRS 325
T+T + NP++ ++C LC K F T H H G+ C P C +
Sbjct: 6 TATTTGKPSRSTKNPDAP-RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKR 64
Query: 324 FSRSYDMRSHLQRIH 280
FSRS ++ H RIH
Sbjct: 65 FSRSDELTRH-ARIH 78
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 33.5 bits (73), Expect = 0.030
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = -2
Query: 423 CQLCPKGFKHPTSLTLHKDAHAG-----KT-QCPV--CHRSFSRSYDMRSHLQRIHQG 274
C +C + FK L H H KT CP+ C +SF+RS ++ H+ IH+G
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEG 263
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -2
Query: 375 HKDAHAGKTQCPVCHRSFSRSYDMRSHLQRIH 280
+K+A P C+ F R YDM HL H
Sbjct: 343 YKEAREYSCSFPECNYRFKRLYDMHRHLNSHH 374
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -2
Query: 462 DKNNPESDLAKFRC--QLCPKGFKHPTSLTLHKDAHAGKTQCPVCHRSFSRSYDMRSHLQ 289
+ N S F C + C K + P+ L H H+ + + S+++ +SHL
Sbjct: 12 ESKNLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHL- 70
Query: 288 RIHQGKQLTIK 256
+IH+ +K
Sbjct: 71 KIHKRCHTNVK 81
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 33.1 bits (72), Expect = 0.039
Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 9/138 (6%)
Frame = -2
Query: 654 RDENIPQVCPVNNVSEQENGNDEASQDISRPDDSINTKVKSVLPPSEEMQVDPQTSTAAP 475
R+ P N +SE + + S + + NT P S P S+ A
Sbjct: 3 RESLAPIASKANTLSESKVSENLMSINSDSGTSNANT------PSSVTSNSKPVASSTAA 56
Query: 474 EDLSDKNNPESDLAKFRCQLCPKGFKHPTSLTLHKDAHAGKTQ--C------PV-CHRSF 322
+ D N P + ++ C+ C + F L H +H + C P C R F
Sbjct: 57 K--KDPNAPPQKVKQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQF 114
Query: 321 SRSYDMRSHLQRIHQGKQ 268
SR + H Q+IH+ Q
Sbjct: 115 SRRDLLLRHQQKIHRNPQ 132
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 31.5 bits (68), Expect = 0.12
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Frame = -2
Query: 432 KFRCQL--CPKGFKHPTS---LTLHKDAHAGKTQ--C--PVCHRSFSRSYDMRSHLQRIH 280
K+ C+ CP+ TS L H +H G+ C P C RSF+RS + H++ +H
Sbjct: 72 KYTCEWDDCPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVH 131
Query: 279 QGKQL 265
+ L
Sbjct: 132 EADTL 136
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 31.5 bits (68), Expect = 0.12
Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 6/144 (4%)
Frame = -2
Query: 693 SDEPINLAPVXSNRDENIPQVCPVNNV--SEQENGNDEASQDISRPDDSINTKVKSVLPP 520
S P +PV ++ NIP + P + + S + A+ D++ NT+ + P
Sbjct: 462 SSSPPLTSPVKTSA--NIPNLLPTSELDSSNAPHSQSAATHDLNDVKSYYNTRSSHSVVP 519
Query: 519 SEEMQVDPQTSTAA--PEDLS--DKNNPESDLAKFRCQLCPKGFKHPTSLTLHKDAHAGK 352
+ Q T AA P + D S Q + FK + + +
Sbjct: 520 NPTNQKVSITGAAADGPNGSAPVDTTPTNSSTTATGAQRKRRKFKFGKQIGPVRCTLQNR 579
Query: 351 TQCPVCHRSFSRSYDMRSHLQRIH 280
+C+ FSR+YD+ H IH
Sbjct: 580 VTGEICNTVFSRTYDLIRHQDTIH 603
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 30.7 bits (66), Expect = 0.21
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -2
Query: 345 CPVCHRSFSRSYDMRSHLQRIHQGKQLTIKI---RYKNGDNV 229
CP C + F RS +R H++ +H ++ + I R+ DN+
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLHTSEKPFVCICGKRFSRRDNL 466
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 29.9 bits (64), Expect = 0.36
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = -2
Query: 447 ESDLAKFRC--QLCPKGFKHPTSLTLHKDAHAGKTQ--CPVCHRSFSRSYDMRSHLQRIH 280
E D+ +++C Q C K F H +H CP C SF+RS + H+ + H
Sbjct: 12 EGDI-RYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKH 70
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 29.5 bits (63), Expect = 0.48
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -2
Query: 429 FRCQLCPKGFKHPTSLTLHKDAHA-GKTQCPVCHRSFSRSYDMRSHLQR 286
+RC LC GF L H H G+ C + F+R + H QR
Sbjct: 473 YRCDLCKAGFVRHHDLKRHLRIHENGRPYVCECLKRFNRLDALNRHKQR 521
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 28.7 bits (61), Expect = 0.84
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -2
Query: 621 NNVSEQENGNDEASQDISRPDDS-INTKVKSVLPPSEEMQVDPQTSTAAPEDLSDKNNPE 445
N S+ E ++E + I R S IN V PP +EM DP S+ + S K + E
Sbjct: 130 NRRSQDEEESEEEHRPILRERTSRINYSVPLAFPPVDEMDGDP--SSQVNQSRSRKTHSE 187
Query: 444 SDLAK 430
+ K
Sbjct: 188 LAITK 192
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 28.7 bits (61), Expect = 0.84
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = -2
Query: 687 EPINLAPVXSNR----DENIPQVCPVNNVSEQENGNDEASQDISRPDDSI---NTKV-KS 532
EP+N V + R DEN+ CP+N V E E ++I + DDS+ +T+V S
Sbjct: 612 EPLNPVAVKAQRKVMPDENLDLNCPINGVIEVPK---ELLENIIQSDDSLINFDTEVPSS 668
Query: 531 VLPPSEEMQVDPQTSTAAPEDLS 463
+ + Q + S DLS
Sbjct: 669 GIDTFSKKQFNSLESVPVQRDLS 691
>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 408 KGFKHPTSLTLHKDAHAGKTQCPVCHR 328
K + H + T+HK+A +CP C++
Sbjct: 19 KDYTHELTQTVHKNAKLSLQKCPACNK 45
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -2
Query: 651 DENIPQVCPVNNVSEQENGNDEASQDISRPDDSINTKVKSVLPPSEE 511
++ PQ+ NN+ + NDE + +SR DS V + +E
Sbjct: 20 NDGSPQLNGDNNIQSSDGHNDENEESLSRKRDSSGATVGDLKQEEKE 66
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = -2
Query: 615 VSEQENGNDEASQDISRPDDSINTKVKSVLPPSEEMQVDPQTSTAAP 475
++E+++ +S +I DD T ++ + S++++ +PQ AP
Sbjct: 128 IAEKKDSEQPSSHEIHLTDDDDKTTLQKQMVESDQLKKNPQEVKLAP 174
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 2.6
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Frame = -2
Query: 684 PINLAPVXSNRDENIPQVCPVNNVSEQENGNDEASQDISRPDD-----SINTKVKSVLPP 520
P+N P S D+ +N E + S + D+ SI+ +++
Sbjct: 365 PLNNVPSKSLNDDITQDELNSSNADVDEEVIETTSLEEKNVDNQEFVTSISNGNQTLEDT 424
Query: 519 SEEMQVDPQTSTAAPEDLSDKNNPESDLAKFRCQLCPKG 403
S Q P P +KN+ SDL F L KG
Sbjct: 425 SHSPQTQPPFQPPYPSKADEKNSYHSDLYNFGSSLTVKG 463
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -2
Query: 561 DDSINTKVKSVLPPSEEMQVDPQTSTAAPEDLSDKNNPESDLAKFRCQLCPKGFKHPTSL 382
DD + +VLP S + +DP+ STA NNP + + R Q K + L
Sbjct: 106 DDGLGDGSSTVLPSSLKQMLDPEISTA--------NNPSAKPRRTRLQTAWKEATNSAGL 157
Query: 381 TL 376
+L
Sbjct: 158 SL 159
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 570 RYLVMLHHYHFLVQIHCLLDILVE 641
RY+ + HH F++ I C+ +I+ E
Sbjct: 566 RYIHIFHHIQFMLSIPCVAEIVRE 589
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = -2
Query: 438 LAKFRCQLCPKGFKHPTSLTLHKDAHAGKT--QC--PVCHRSFSRSYDMRSHLQRIHQGK 271
+ + C C + F H +H G+ +C P C + F+R ++ H+ R H K
Sbjct: 1 MKSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHV-RTHLRK 59
Query: 270 QL 265
L
Sbjct: 60 AL 61
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 267 TASLGEFFANDSSCHMNERRIGDKLDTVFYQHVHPCEVS 383
T + E + + + N+R + L +V Y H HP VS
Sbjct: 637 TVNTKEIRSRSALSYQNDRPLATDLPSVIYNHKHPNVVS 675
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 582 SQDISRPDDSINTKVKSVLPPSEEMQVDPQTSTAAPEDLSDKNNPESD 439
+ ++S D + KS PP + V T +AA + SD+ E+D
Sbjct: 398 NDNVSAKHDKESENGKSKFPPPSQTLVTTSTISAAGNEPSDEIGSEND 445
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = -2
Query: 645 NIPQVCPVNNVSEQENGNDEASQDISRPDDSINTKVKSVLPPSEEM 508
N P P + + Q N N+EA + + D + LPP +
Sbjct: 755 NPPPFAPKSGIKIQVNENEEAPETAANKDKQELKSIADSLPPPSSL 800
>SPAC1556.06.2 |meu2|SPAC1556.06b, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 99
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 58 HKIAHSKLGYFCTSLHNI 5
H I+ S+LGYFC NI
Sbjct: 17 HAISDSELGYFCEDQSNI 34
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 58 HKIAHSKLGYFCTSLHNI 5
H I+ S+LGYFC NI
Sbjct: 694 HAISDSELGYFCEDQSNI 711
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = -2
Query: 624 VNNVSEQENGNDEASQDISRPDDSINTKVKSVLPPSEEMQVDPQTSTAA--PEDLSDKNN 451
VNN+S + G+ ++ +K ++ S + +++ A P+ KN+
Sbjct: 443 VNNISVRPPGSGSSATKARNLRRKKARILKRLMQESNDTFSANESTVVANVPDSYLTKND 502
Query: 450 PESDLAKFRCQLCPKGFKHPTSLT 379
E + ++ PK HP SL+
Sbjct: 503 EEDSASLASLKVAPKYVSHPVSLS 526
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,867
Number of Sequences: 5004
Number of extensions: 58665
Number of successful extensions: 218
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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