Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_H07
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    42   4e-06
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    37   2e-04
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    36   4e-04
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    30   0.018
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    29   0.056
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.5  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 42.3 bits (95), Expect = 4e-06
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -2

Query: 429 FRCQLCPKGFKHPTSLTLHKDAHAGKT--QCPVCHRSFSRSYDMRSHLQRIH 280
           +RC +C K F  P  LT H   H G+   QC  C +SFS   ++  H +RIH
Sbjct: 92  YRCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVH-RRIH 142



 Score = 42.3 bits (95), Expect = 4e-06
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -2

Query: 483 AAPEDLSDKNNPESDLAKFRCQLCPKGFKHPTSLTLHKDAHAGKT--QCPVCHRSFSRSY 310
           A P  L+      +    ++C+ C K F    +L++H+  H  +   +C VC R+F  S 
Sbjct: 102 AVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSG 161

Query: 309 DMRSHLQRIHQGKQ 268
            +  H+ RIH G++
Sbjct: 162 KLHRHM-RIHTGER 174



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = -2

Query: 489 STAAPEDLSDKNNPESDLAKFRCQLCPKGFKHPTSLTLHKDAHAGKT--QCPVCHRSFSR 316
           S +  E+LS      +    ++C +C + F+H   L  H   H G+   +C VC ++F +
Sbjct: 128 SFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQ 187

Query: 315 SYDMRSHLQRIHQGKQ 268
           S  +  H+ R H G++
Sbjct: 188 SGQLVIHM-RTHTGEK 202



 Score = 38.3 bits (85), Expect = 7e-05
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 429 FRCQLCPKGFKHPTSLTLHKDAHAGKT--QCPVCHRSFSRSYDMRSHLQ 289
           + C +C K F +   L LH+ AH G+   +C +CH +F     M  H++
Sbjct: 232 YTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIK 280



 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 423 CQLCPKGFKHPTSLTLHKDAHAGKT--QCPVCHRSFSRSYDMRSHLQRIHQGKQL 265
           C+ C KGF     L +H   H G+    C +C +SF  ++ ++ H Q  H G+++
Sbjct: 206 CKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLH-QVAHYGEKV 259



 Score = 28.3 bits (60), Expect = 0.074
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
 Frame = -2

Query: 555 SINTKVKSVLP--PSEEMQVDPQTST-AAPEDLSDKNNPESDLAKFRCQLCPKGFKHPTS 385
           S+  ++ +V P  P + +   P  S   +P   S+      +   ++C LC K F     
Sbjct: 17  SVKNEISTVEPVDPVKSLVCSPDLSVFTSPACGSETPLTNIEEKTYQCLLCQKAFDQKNL 76

Query: 384 LTLHKDAHAGKTQ----CPVCHRSFSRSYDMRSHLQRIHQGKQ 268
              H  +H  + +    C +C ++F+    +  H  R H G++
Sbjct: 77  YQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRH-YRTHTGEK 118



 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 134 K*FKCTMCMIQFGNK 178
           K +KCT+C   FG+K
Sbjct: 258 KVYKCTLCHETFGSK 272



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 429 FRCQLCPKGFKHPTSLTLHKDAHA 358
           ++C LC + F    ++ LH   H+
Sbjct: 260 YKCTLCHETFGSKKTMELHIKTHS 283


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = -2

Query: 429 FRCQLCPKGFKHPTSLTLHKDAHAGKTQCPVCHRSFSRSYDMRSHLQRIHQGKQ 268
           F C+ C K +    +L +H   H    +C +C ++FSR + ++ H+ R H G++
Sbjct: 17  FSCKYCEKVYVSLGALKMHIRTHTLPCKCHLCGKAFSRPWLLQGHI-RTHTGEK 69


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 429 FRCQLCPKGFKHPTSLTLHKDAHAGKT--QCPVCHRSFSRSYDMRSHLQRIHQGKQ 268
           F C  C K F     L  H   H G+    C  C R F +  ++R HL R+H G++
Sbjct: 10  FECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHL-RVHTGER 64



 Score = 33.9 bits (74), Expect = 0.001
 Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
 Frame = -2

Query: 363 HAGKT--QCPVCHRSFSRSYDMRSHLQRIHQGKQ 268
           H G+   +CP CH+ F+R + +++H+ R+H G++
Sbjct: 4   HTGEKPFECPECHKRFTRDHHLKTHM-RLHTGEK 36


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 348 QCPVCHRSFSRSYDMRSHLQRIHQ 277
           +CP C R+FS  Y ++ H Q  H+
Sbjct: 7   ECPYCRRNFSCYYSLKRHFQDKHE 30



 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 462 DKNNPESDLAKFRCQLCPKGFKHPTSLTLHKD-AHAGKT 349
           DK+     L  + C+ C + ++   SLT HK   H G +
Sbjct: 27  DKHEQSDTL--YVCEFCNRRYRTKNSLTTHKSLQHRGSS 63


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 28.7 bits (61), Expect = 0.056
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -2

Query: 432 KFRCQLCPKGFKHPTSLTLH-KDAHAGKTQ---CPVCHRSFSRSYDMRSHLQRIHQ 277
           +FRC+ C K     T L  H ++ H   ++   C +C R +S    +R+H    H+
Sbjct: 2   EFRCEPCNKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYHR 57


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = -2

Query: 627 PVNNVSE--QENGNDEASQDISRPDDSINTKVKSVLPPSEEMQVDPQTSTAAPEDLSDKN 454
           PVN V+   Q+ G  +   D    D+S N  +KS          D +   +  +  S   
Sbjct: 67  PVNFVAGGIQQAGKPKEETDDKDDDESDNENIKSQKEFPNSSSSDDERPNSIHQRASFSL 126

Query: 453 NPESDLAKFR 424
           N + D+A  R
Sbjct: 127 NTDGDIAGLR 136


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 423 CQLCPKGFKHPTSLTLHKDAH 361
           C LC K F+   SL  HK  +
Sbjct: 404 CALCHKVFRTLNSLNNHKSIY 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,305
Number of Sequences: 438
Number of extensions: 4022
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)