Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_H04
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   0.64 
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    26   4.5  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    26   5.9  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   5.9  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   5.9  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 306  YWAELSEAYWIIE*ISFVQNIPRLNIRCSSFCVP 205
            +W  LS  YWI++   F+     LN RC  +  P
Sbjct: 2320 HWESLSNTYWIVQLNIFLSRCFDLNQRCQFYKKP 2353


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = -3

Query: 683 ELQSPQVGAVNFFTGMGGFLQTLIFGYAGIRIHLDRIEITRPQLPP 546
           E+    V A+      GG + T+ F    +R HL       P  PP
Sbjct: 130 EVSKATVQAIQQIKNAGGSITTVYFSPLALRAHLHPSSFRTPPRPP 175


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 95  NVVNPLIHFRKLVSDYQTRKKRSLFDYHQ 181
           N  NP  +  KL+ D+  RKK + F+ HQ
Sbjct: 263 NEKNPKEYILKLLFDHLNRKKTNNFNTHQ 291


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 677  QSPQVGAVNFFTGMGGFLQTLIFG-YAGI 594
            + P +G + F +GM G L T + G YAG+
Sbjct: 1016 EKPIIGGIEFSSGM-GLLHTALLGVYAGV 1043


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 337 GTARIVEIPSLGSVTVIPGVSVTLYLPSFMTNGHWSCTDDTVSVT 471
           GT  +V IP+ G+VT        LY  +F  NG  S T + V  T
Sbjct: 223 GTVEVV-IPTAGTVTETAVSGSELYTSTFPANGTTSGTVEVVIPT 266



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 337 GTARIVEIPSLGSVTVIPGVSVTLYLPSFMTNGHWSCTDDTVSVT 471
           GT  +V IP+ G+VT        LY  +F  NG  S T + V  T
Sbjct: 363 GTVEVV-IPTAGTVTETEISGSELYTSTFPANGTTSGTVEVVIPT 406


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -3

Query: 557 QLPPETKEFKIKGIKYL 507
           Q PPE  E KIK  KYL
Sbjct: 174 QAPPELPELKIKETKYL 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,396
Number of Sequences: 5004
Number of extensions: 60180
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)