Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_H04
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0628 - 5460030-5462960                                           30   1.5  
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419...    28   6.1  
04_03_0271 - 13694669-13694770,13694859-13694999,13695258-136953...    28   6.1  
11_08_0082 + 28239159-28241237                                         28   8.1  
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465...    28   8.1  

>08_01_0628 - 5460030-5462960
          Length = 976

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -2

Query: 582 GQDRDYKAATAARNERI*NKRY*IFRIESVD--AYPGDQR---HADGVVGARPVAVSHE 421
           G D DY +  AA  ER+ NKRY I   +  D   + G +R     DGV G+R V  + +
Sbjct: 290 GGDTDYGSLVAALRERLANKRYLIVLDDVWDETLWDGLERAMPDGDGVAGSRVVITTRK 348


>09_03_0111 -
           12440818-12441129,12441242-12441585,12441663-12441989,
           12443444-12443602,12443687-12443784,12444745-12444821
          Length = 438

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 91  FQCC*SANSFQKTGFRLSNQKETFVIR 171
           F C     S+ K GF L NQK TF  R
Sbjct: 82  FDCSCYPGSYMKNGFCLPNQKSTFPAR 108


>04_03_0271 -
           13694669-13694770,13694859-13694999,13695258-13695370,
           13696253-13696304,13696538-13696660,13696985-13697091,
           13697280-13697329,13698284-13698387,13698610-13698690,
           13698829-13698913,13699370-13699446,13700587-13700676,
           13701338-13701397,13701768-13701872,13701986-13702035,
           13702174-13702280,13704735-13704805,13704916-13705144,
           13705228-13705704,13705807-13706405
          Length = 940

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +1

Query: 229 NIKSWYILHKANLLYDPIGLR*FCPIISAGSLQSFHGTARIVEIPSLGSVTVIPGVSVTL 408
           N  SW  + KA  L + IGL+ F P+   G   +  G+  +VE+   G +  +  +  ++
Sbjct: 587 NNPSWIAIEKATNLGEKIGLKHFKPVKPLGCGDT--GSVHLVELQGSGELFAMKAMDKSV 644

Query: 409 YL 414
            L
Sbjct: 645 ML 646


>11_08_0082 + 28239159-28241237
          Length = 692

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 615 QCLQEPSHPSEEIHSADLGALQLTP 689
           Q LQ P HP  + H AD+G  +  P
Sbjct: 121 QLLQSPPHPVSDNHDADVGDTRSAP 145


>02_01_0622 -
           4658133-4658150,4658269-4658337,4658436-4658462,
           4658808-4658873,4658954-4659076,4659562-4659629,
           4659703-4659766,4659994-4660135,4660218-4660306,
           4660574-4660637,4660870-4661021,4661124-4661261,
           4661742-4661867,4661971-4662183,4662343-4662426,
           4662583-4662742,4662993-4663126,4664047-4664136,
           4664313-4664471,4665528-4665611,4666170-4666289,
           4666338-4666391,4666899-4666945,4667556-4667598,
           4667730-4668586,4668845-4668899
          Length = 1081

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
 Frame = -3

Query: 560 PQLPPETKEFKIKG--IKYLGSSLSMHIQATSVTLTVSSVHDQWPLVMNDGRYNVTLTPG 387
           P  PPE    K+    +  + S LS     T+V LTVS+ H   P  +N+G + V+    
Sbjct: 122 PSSPPEGDLEKLTAAPLPSVVSPLSPSAPNTAVALTVSTSHGSVPSSLNEG-HGVS---- 176

Query: 386 MTVTLPKDGISTIRAVPWKDCK-LPADIIGQN 294
             +  PK+   T    P   C+ LP ++   N
Sbjct: 177 SKIAAPKEEHVTPTMDPPSRCEHLPLEVAPSN 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,160,690
Number of Sequences: 37544
Number of extensions: 376385
Number of successful extensions: 955
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)