Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_H02
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.49 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.64 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    24   1.5  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   3.4  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   7.9  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = -1

Query: 404 IFFCLQFIDFSFLCIFYFNMLFLFF 330
           +F C   ++ +  C+F+   + +FF
Sbjct: 222 VFVCFSLVEDTLPCVFFLGSILIFF 246


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 343 YFYSSIHFVKFHKLPLC*VIFLLC 272
           YFYS+      H L  C +I LLC
Sbjct: 214 YFYSAFIIFTIHLLFYCVLIILLC 237



 Score = 25.0 bits (52), Expect = 0.64
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 413 C*PIFFCLQFIDFSFLCIFYFNMLFLFFDT--FCKVS 309
           C   F+C   I    LCI+YF   F+ F T  +C  S
Sbjct: 284 CIYYFYCALII---LLCIYYFCRAFIIFPTHFYCAFS 317



 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 404 IFFCLQFIDFSFLCIFYFNMLFLFF 330
           +F+C+  I    LCI+YF   F+ F
Sbjct: 227 LFYCVLII---LLCIYYFYYAFILF 248



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 377 FSFLCIFYFNMLFLFF 330
           F  LCI+YF   F+ F
Sbjct: 141 FFLLCIYYFYCAFIIF 156



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 367 YVFFILTCYFYSSIHFVKFHKLPLC*VIFLLC 272
           Y F IL C +Y    F+ F       ++FLLC
Sbjct: 105 YAFIILLCVYYFYYAFIIF----TVHLLFLLC 132


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = +2

Query: 449 NLR*LDE--PRPAGGFEDMNV--ALGPMNKTILRIRRWNESSLWYLNV 580
           N+R LDE     AG    +N      P  KT++ I  WNE S  Y  V
Sbjct: 68  NVRHLDEYLDVDAGTIAKLNALKVKNPNLKTLIAIGGWNEGSETYSQV 115


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 515 PMNKTILRIRRWNESSLWYLNVTIVLHLR 601
           P  KT++ I  WNE S+ Y  +     LR
Sbjct: 90  PNLKTLVAIGGWNEGSVNYSKMAASSSLR 118


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 308 MKLYKMYRRIKITC*NKKYIEMKSQ 382
           +K++   RR K    NKK IE KSQ
Sbjct: 201 IKIWFQNRRAKERKQNKKRIEEKSQ 225


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,119
Number of Sequences: 336
Number of extensions: 3870
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)