Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_H02
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 29 0.53
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 29 0.70
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 29 0.92
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 28 1.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 3.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 4.9
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 4.9
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.5
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 26 6.5
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 25 8.6
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 8.6
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 8.6
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 29.5 bits (63), Expect = 0.53
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 615 FILGKN*GCVLLKKLIFGKRSSSIGSLQTDSSHD 716
F +GK GC + +L GK I S+++D+ HD
Sbjct: 210 FNVGKKNGCPISLRLSDGKNVYGIASIKSDTEHD 243
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 29.1 bits (62), Expect = 0.70
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 586 NSHVQIPQTRFVP--PTNSQNSFIHRPQSHVHVFKTPGGSGLIKLP 455
N+H+ T P P N ++S IH+ QS+ H+ +P S + P
Sbjct: 155 NNHILHKNTSSHPSSPVNGKSSDIHKSQSYQHLKNSPPNSRTARKP 200
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 0.92
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = -2
Query: 727 SQPPSCEESVCSEPMELDRFPNMSFFSKTQPQFFPRMNSPIFP----QMQYNSHVQIPQT 560
S P S + S+P D++P+ S + ++ + P + +N H++IPQ+
Sbjct: 290 SPPQSSPSAQSSQPFSRDKYPHSMTVSPSNARYLKKHLDDTIPSNVSDINHNDHLKIPQS 349
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 164 MFSYSQYLAPTRDQQVLKLILVSNITTNGLRLTILT 271
++ Y Q T + L L + SNI TNGLR ++ T
Sbjct: 414 VYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLAT 449
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +1
Query: 220 NFSLKHYN*WLTTNDSYNITKKSLNIMAVYETLQNVSKNKNNMLK 354
+ +K + +T ND+ N K + + ++ ++N KNKN +++
Sbjct: 1377 SLGIKRFIESITMNDASNQFKIDVFVKFIFPFIKNQMKNKNELIR 1421
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 161 LMFSYSQYLAPTRDQQVLKLILVSNIT 241
+ FS S +L D+ +L LIL NIT
Sbjct: 1162 IYFSLSDFLKENSDEIILVLILTKNIT 1188
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -2
Query: 673 RFPNMSFFSKTQPQFFPRMNSPIFPQMQYNSHVQIPQTRFVP 548
R P+M+ Q ++P + +P++P M+ +P F P
Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMK-----DVPNNPFTP 281
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 6.5
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +1
Query: 181 ISGTNTRSASLKTNFSLKHYN*WLTTND----SYNITKKSLNIMAVYETLQNVSKNK 339
IS + S S +N KHY D S N K + YE L+++SKN+
Sbjct: 28 ISSNTSSSNSENSNIQGKHYTQVGEDADNSFISENTPKNTFESTQTYENLESISKNE 84
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 6.5
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = -2
Query: 610 PIFPQMQYNSHVQIPQTRFVPPTNSQNSFIHRPQSHVHVFKTPGGSGLIKLPQVDKF 440
P+ PQ NS IP T P+ N ++P S F P S K P +D F
Sbjct: 461 PMMPQQSNNSEASIPSTTPQSPSVVSNG-ENKPSSSPVFFNGPVSSE--KEPILDNF 514
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 558 DSFHRRILRIVLFIGPRATFMSSKPPAGLGSSSYLKL 448
D+ HR I+ + LF G + + GS++YLK+
Sbjct: 323 DAVHRVIMNVPLFQGMSKKSLQIASASSGGSANYLKI 359
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 498 MSSKPPAGLGSSSYLKLISSQLANR 424
MSSKPP+ SY + ++S +N+
Sbjct: 1 MSSKPPSNTPKFSYARALASSQSNK 25
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/62 (22%), Positives = 25/62 (40%)
Frame = -2
Query: 667 PNMSFFSKTQPQFFPRMNSPIFPQMQYNSHVQIPQTRFVPPTNSQNSFIHRPQSHVHVFK 488
P +FF Q + + PQ Q ++ Q PQ PP N + + + ++ +
Sbjct: 293 PQNAFFPNPQGNVGAQSLQSMSPQDQPSTQQQQPQRTAAPPNNPNVNATNNNRINIEMLN 352
Query: 487 TP 482
P
Sbjct: 353 IP 354
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,036
Number of Sequences: 5004
Number of extensions: 60355
Number of successful extensions: 164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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