Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_H02
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0152 - 41525917-41526845,41527844-41527919                       28   6.8  
01_07_0136 + 41357568-41357640,41357793-41358724                       28   6.8  
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825...    28   9.0  

>01_07_0152 - 41525917-41526845,41527844-41527919
          Length = 334

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 495 SSKPPAGLGSSSYLKLISSQLANRGCVLLANFF 397
           S  P AG+   +Y+K I+  LA+ G  LLAN +
Sbjct: 164 SYPPSAGVFRDAYMKDIARYLASTGAPLLANVY 196


>01_07_0136 + 41357568-41357640,41357793-41358724
          Length = 334

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 495 SSKPPAGLGSSSYLKLISSQLANRGCVLLANFF 397
           S  P AG+   +Y+K I+  LA+ G  LLAN +
Sbjct: 164 SYPPSAGVFRDAYMKDIARYLASTGAPLLANVY 196


>08_02_0516 +
           18080706-18080760,18081796-18081885,18082479-18082573,
           18083658-18083726,18083812-18084393
          Length = 296

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query: 640 QPQFFPRMNSPIFPQMQYNSHVQIPQTRFVPP--TNSQNSFIHRPQSHVH 497
           QPQ  P+   P+ PQ+Q +   Q   ++  P    + Q+    +PQ  VH
Sbjct: 159 QPQLHPQPQQPLQPQLQLHPQPQQQPSQLHPQQLLHPQSQQTPQPQPQVH 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,396,299
Number of Sequences: 37544
Number of extensions: 354537
Number of successful extensions: 707
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)