Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_H02
         (740 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070071-1|AAH70071.1| 1271|Homo sapiens RBM16 protein protein.        31   3.3  
AL833928-1|CAD38784.1|  614|Homo sapiens hypothetical protein pr...    31   3.3  
AL591499-2|CAH70694.1| 1271|Homo sapiens RNA binding motif prote...    31   3.3  
AL136976-1|CAI21482.1| 1271|Homo sapiens RNA binding motif prote...    31   3.3  
AL121952-2|CAI21474.1| 1271|Homo sapiens RNA binding motif prote...    31   3.3  
AB029039-1|BAA83068.2| 1330|Homo sapiens KIAA1116 protein protein.     31   3.3  

>BC070071-1|AAH70071.1| 1271|Homo sapiens RBM16 protein protein.
          Length = 1271

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -2

Query: 727  SQPPSCEESVCSEPMELDRFPNMSFFSKTQPQFFPRMNSPIFPQMQYNSHVQIPQTRFVP 548
            +QPP+  +++    +   R P M      +P   P+   P FP +Q      IP  R +P
Sbjct: 899  TQPPAGPQNLPPLSIPNQRMPTMPMLD-IRPGLIPQAPGPRFPLIQPG----IPPQRGIP 953

Query: 547  PTNSQNSFIHRP 512
            P +  +S +H P
Sbjct: 954  PPSVLDSALHPP 965


>AL833928-1|CAD38784.1|  614|Homo sapiens hypothetical protein
           protein.
          Length = 614

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -2

Query: 727 SQPPSCEESVCSEPMELDRFPNMSFFSKTQPQFFPRMNSPIFPQMQYNSHVQIPQTRFVP 548
           +QPP+  +++    +   R P M      +P   P+   P FP +Q      IP  R +P
Sbjct: 242 TQPPAGPQNLPPLSIPNQRMPTMPMLD-IRPGLIPQAPGPRFPLIQPG----IPPQRGIP 296

Query: 547 PTNSQNSFIHRP 512
           P +  +S +H P
Sbjct: 297 PPSVLDSALHPP 308


>AL591499-2|CAH70694.1| 1271|Homo sapiens RNA binding motif protein 16
            protein.
          Length = 1271

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -2

Query: 727  SQPPSCEESVCSEPMELDRFPNMSFFSKTQPQFFPRMNSPIFPQMQYNSHVQIPQTRFVP 548
            +QPP+  +++    +   R P M      +P   P+   P FP +Q      IP  R +P
Sbjct: 899  TQPPAGPQNLPPLSIPNQRMPTMPMLD-IRPGLIPQAPGPRFPLIQPG----IPPQRGIP 953

Query: 547  PTNSQNSFIHRP 512
            P +  +S +H P
Sbjct: 954  PPSVLDSALHPP 965


>AL136976-1|CAI21482.1| 1271|Homo sapiens RNA binding motif protein 16
            protein.
          Length = 1271

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -2

Query: 727  SQPPSCEESVCSEPMELDRFPNMSFFSKTQPQFFPRMNSPIFPQMQYNSHVQIPQTRFVP 548
            +QPP+  +++    +   R P M      +P   P+   P FP +Q      IP  R +P
Sbjct: 899  TQPPAGPQNLPPLSIPNQRMPTMPMLD-IRPGLIPQAPGPRFPLIQPG----IPPQRGIP 953

Query: 547  PTNSQNSFIHRP 512
            P +  +S +H P
Sbjct: 954  PPSVLDSALHPP 965


>AL121952-2|CAI21474.1| 1271|Homo sapiens RNA binding motif protein 16
            protein.
          Length = 1271

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -2

Query: 727  SQPPSCEESVCSEPMELDRFPNMSFFSKTQPQFFPRMNSPIFPQMQYNSHVQIPQTRFVP 548
            +QPP+  +++    +   R P M      +P   P+   P FP +Q      IP  R +P
Sbjct: 899  TQPPAGPQNLPPLSIPNQRMPTMPMLD-IRPGLIPQAPGPRFPLIQPG----IPPQRGIP 953

Query: 547  PTNSQNSFIHRP 512
            P +  +S +H P
Sbjct: 954  PPSVLDSALHPP 965


>AB029039-1|BAA83068.2| 1330|Homo sapiens KIAA1116 protein protein.
          Length = 1330

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -2

Query: 727  SQPPSCEESVCSEPMELDRFPNMSFFSKTQPQFFPRMNSPIFPQMQYNSHVQIPQTRFVP 548
            +QPP+  +++    +   R P M      +P   P+   P FP +Q      IP  R +P
Sbjct: 958  TQPPAGPQNLPPLSIPNQRMPTMPMLD-IRPGLIPQAPGPRFPLIQPG----IPPQRGIP 1012

Query: 547  PTNSQNSFIHRP 512
            P +  +S +H P
Sbjct: 1013 PPSVLDSALHPP 1024


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,911,872
Number of Sequences: 237096
Number of extensions: 2002311
Number of successful extensions: 3607
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3607
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)