Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_G24
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.2  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    27   3.0  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   5.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   9.1  

>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 140 RDEVSDLSNFMCGICLESEERCLIENGP 57
           + ++  + NF CG CL+    C+IE  P
Sbjct: 122 KHKIKCVGNFPCGRCLKKGLECVIETPP 149


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = -3

Query: 750 INLKFGLMLYSSVEYILQLHLKALAVVNVLYLLII 646
           INL FG+ ++  VE++L L +K +A V  + L II
Sbjct: 203 INL-FGVRVFGEVEFVLAL-IKVVATVGFIILAII 235


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = -1

Query: 227  KKTTYFCGMLFT----ILKCNVTFRSFAKDVFN-RDEVSD-LSNFMCGICLE 90
            K ++  CG  F+     + C +  R F  D     +E++D +S F C IC+E
Sbjct: 1351 KNSSCLCGEEFSPRDSFIDCTICERRFHYDCVGLNNEIADSVSKFTCPICME 1402


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 320 YEDFLFHEFNHNSLSDSILE 261
           +EDF+FHE NH      ILE
Sbjct: 367 HEDFIFHEGNHFRQLKLILE 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,254
Number of Sequences: 5004
Number of extensions: 49703
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)