Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_G23
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb...    25   5.8  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    25   5.8  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   5.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   7.6  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   7.6  

>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -2

Query: 291 SQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQXKKVGMAPFYQLLVGSMVFFY 112
           S  ++  I  ++ R    P+      S +++ W +K    K    AP   L+   +VF Y
Sbjct: 25  SSARMGRIVDFYSRLPHGPAPKKS--SNSFFSWYYKKYLGKNASGAPLLHLVGAVLVFSY 82

Query: 111 A 109
           A
Sbjct: 83  A 83


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 209 EPGGDGNISTYNXRRLAWLHSTNYSLA 129
           EP G+G+I+T N  RL  L S   + A
Sbjct: 289 EPNGEGSIATINGLRLGRLPSQKVNWA 315


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 405 ASGFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPD 301
           A   S+N A+G  P+ Y P    P  P  Y  +P+
Sbjct: 87  APAASQNRAYGAAPQPYPPQGGYPQQPYYYPNQPN 121


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -2

Query: 399 GFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPDTPFSQLK-LNEIGSWFGRRSKTPSAVA 223
           G   N    +Y ++  P    PY P  Y G    PF Q +   +  + FG  S+   +VA
Sbjct: 28  GMPINQGGMNYQQQTYP-YQQPYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVA 86


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 239 LRLPWPELSVEPGGD 195
           +R+PWP L+VE  GD
Sbjct: 174 IRIPWPVLTVEFYGD 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,321
Number of Sequences: 5004
Number of extensions: 35318
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)