Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_G23
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 30 0.81
09_04_0385 + 17167174-17167440,17173321-17173962 30 0.81
02_05_0516 + 29694631-29695182 30 0.81
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 28 4.3
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 27 5.7
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782... 27 7.5
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402 27 7.5
01_06_0208 - 27540077-27540992,27541310-27541497 27 7.5
07_03_0832 - 21823518-21823826,21823920-21824070,21824148-218243... 27 10.0
06_01_0012 + 166514-167194 27 10.0
05_04_0317 + 20157849-20158364,20158465-20158628,20159471-201595... 27 10.0
02_05_0718 + 31203358-31203717,31203826-31204011 27 10.0
02_05_0682 + 30857876-30858106,30858187-30858399,30858867-308590... 27 10.0
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 30.3 bits (65), Expect = 0.81
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -2
Query: 375 GDYPKEYNPAVHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGA 217
GD+ Y P Y P Y+G+P P + L+ +G TPS V A
Sbjct: 15 GDHYPYYKPTSRPHYQPPHYHGQPAAPPAPLQQQHLGP----HGVTPSTVGVA 63
>09_04_0385 + 17167174-17167440,17173321-17173962
Length = 302
Score = 30.3 bits (65), Expect = 0.81
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 190 LPSPPGSTESSGHGRRSLAAATEPRTD 270
LP P +T SSG+ R S +A++ PR D
Sbjct: 146 LPPEPSATTSSGNDRSSSSASSPPRAD 172
>02_05_0516 + 29694631-29695182
Length = 183
Score = 30.3 bits (65), Expect = 0.81
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -2
Query: 261 WFGRRSKT-PS--AVAGAFSRAWWRWQHKYVQXKKVGMA 154
W RRSK+ PS A AG + WW W ++ KK G A
Sbjct: 67 WAFRRSKSAPSLGAFAGGPLKRWWDWGVGWLMSKKPGFA 105
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 75 SSCGA*FFXS*WHRRRPCCQRVVGRMEPCQPSXVVR 182
+SC A S W RR P + +EP +P +VR
Sbjct: 810 ASCRAAVASSKWRRRHPSTTKESAGVEPAEPPVLVR 845
>12_02_0792 -
23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = -2
Query: 345 VHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQXKK 166
+HG KPD P L LN+ GS+ SK + + AWW + ++ +
Sbjct: 633 LHGASSTIIKNHKPDNPIPPLTLNQAGSFTVCHSKAWD--SKIVTSAWWVYPYQVSKTAP 690
Query: 165 VG 160
G
Sbjct: 691 TG 692
>10_05_0011 -
7822847-7822880,7823653-7823754,7823859-7824106,
7824195-7824240,7824368-7825984,7826673-7826797,
7826915-7829083
Length = 1446
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 190 LPSPPGSTESSGHGRRS 240
LPS PGST SSG+ RS
Sbjct: 847 LPSTPGSTTSSGYPSRS 863
>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
Length = 566
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -2
Query: 312 GKPDTPFSQLKLNEIGSWFGRRS--KTPSAVAGAFSRAWW 199
G P+ S + FGR S KTP ++ F+R WW
Sbjct: 169 GTPNRSSSSCSSSPDTLGFGRSSSTKTPESMKPCFAREWW 208
>01_06_0208 - 27540077-27540992,27541310-27541497
Length = 367
Score = 27.1 bits (57), Expect = 7.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 243 KTPSAVAGAFSRAWWRW 193
+ P AG+F WWRW
Sbjct: 275 RAPPLSAGSFLTGWWRW 291
>07_03_0832 -
21823518-21823826,21823920-21824070,21824148-21824385,
21824469-21824679,21824789-21825009,21825590-21825697,
21825813-21826142,21826740-21827050,21828969-21829651
Length = 853
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -3
Query: 401 RAFLKIWLSVITPRSIILLYMGLTILPATMXNLILHSAS*S*TKSVRGSVAAARLRLPW 225
R +L IW I+PR+++ ++ PAT + L A+ + + GS A A L W
Sbjct: 69 RLYLGIWYRSISPRTVV--WVANRAAPATAPSPSLTLAANGELRVLDGSAADADAPLLW 125
>06_01_0012 + 166514-167194
Length = 226
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 160 ANLLXLYVLMLPSPPGSTESSGHGRRSLAAATEPRT 267
A + LY +LPSPP +S G+R + A E T
Sbjct: 2 AAMASLYRRVLPSPPAVEFASEEGKRLFSEALESGT 37
>05_04_0317 +
20157849-20158364,20158465-20158628,20159471-20159522,
20159618-20159845,20159928-20160464
Length = 498
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 175 LYVLMLPSPPGSTESSGHGRRSLAAATEPRT 267
LY LPSPP +S GRR A A + T
Sbjct: 21 LYGRALPSPPAVEFASAEGRRLFAEALQGGT 51
>02_05_0718 + 31203358-31203717,31203826-31204011
Length = 181
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 297 EYQVXHSSGQDRKAHVQQDYTPWGNHRKPYF*K 395
E Q H+SG RK H D G+ RKP + K
Sbjct: 106 EQQRRHTSGGGRKKHGGDDDDGSGDERKPRYKK 138
>02_05_0682 +
30857876-30858106,30858187-30858399,30858867-30859067,
30859832-30860086,30860189-30860884
Length = 531
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 261 WFGRRSKTPSAVAGA 217
WFGRRS P+ + GA
Sbjct: 455 WFGRRSSNPNVLVGA 469
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,911,740
Number of Sequences: 37544
Number of extensions: 257127
Number of successful extensions: 808
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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