Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_G19
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       173   6e-44
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       173   6e-44
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                       126   1e-29

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  173 bits (422), Expect = 6e-44
 Identities = 86/172 (50%), Positives = 111/172 (64%), Gaps = 2/172 (1%)
 Frame = -1

Query: 531 LIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSI 352
           LII     K   R+L++G ++E+I TIIPA  LIFIA                 +T+K++
Sbjct: 49  LIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAV 108

Query: 351 GHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLXVDXXXXXXXXXXXXXXITATD 178
           GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL VD              ITA D
Sbjct: 109 GHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAAD 168

Query: 177 VIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIV 22
           VIHS  +P+L VK+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIV
Sbjct: 169 VIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIV 220


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  173 bits (422), Expect = 6e-44
 Identities = 86/172 (50%), Positives = 111/172 (64%), Gaps = 2/172 (1%)
 Frame = -1

Query: 531 LIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSI 352
           LII     K   R+L++G ++E+I TIIPA  LIFIA                 +T+K++
Sbjct: 49  LIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAV 108

Query: 351 GHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLXVDXXXXXXXXXXXXXXITATD 178
           GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL VD              ITA D
Sbjct: 109 GHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAAD 168

Query: 177 VIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIV 22
           VIHS  +P+L VK+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIV
Sbjct: 169 VIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIV 220


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score =  126 bits (303), Expect = 1e-29
 Identities = 67/154 (43%), Positives = 90/154 (58%), Gaps = 2/154 (1%)
 Frame = -1

Query: 531 LIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSI 352
           LII     K   R+L++G ++E+I TIIPA  LIFIA                 +T+K++
Sbjct: 49  LIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAV 108

Query: 351 GHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLXVDXXXXXXXXXXXXXXITATD 178
           GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL VD              ITA D
Sbjct: 109 GHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAAD 168

Query: 177 VIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIF 76
           VIHS  +P+L VK+DA PGRLNQT FFI +   F
Sbjct: 169 VIHSFAVPALAVKMDAVPGRLNQTGFFIKKTWSF 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,093,111
Number of Sequences: 59808
Number of extensions: 176657
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)