Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_G11
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z68748-2|CAA92955.3|  374|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ...    28   5.9  
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ...    28   5.9  
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ...    28   5.9  
AF305937-1|AAG37064.1|  348|Caenorhabditis elegans NADH pyrophos...    28   5.9  

>AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical
           protein C17A2.5 protein.
          Length = 731

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 412 NFTSFTCTKLRAHHFLFSILVAFFLYRFIN*YYLLLKN 299
           NF + T   + A   LFSILVA  +Y F   +YL L +
Sbjct: 383 NFPTITSVLILA--LLFSILVAIIVYEFFEKWYLKLSS 418


>Z68748-2|CAA92955.3|  374|Caenorhabditis elegans Hypothetical
           protein F13H10.2 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 469 VIENAVYKRNDLYSSLCPFDLSTVEWFARRSV 564
           +I +    + D   S+CP +L T +WF R  V
Sbjct: 288 MIAHVAVAKIDQKISVCPDELETAQWFTRHQV 319


>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform c protein.
          Length = 1375

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -3

Query: 442 MKKTVILHKRN---FTSFTCTKLRAHHFLFSILVAFFLYRFIN*Y-YLLLKNKTSIKA*T 275
           +K++ I  KR    + SF CT ++     F +L+   LY FI  + ++ L+  T ++A  
Sbjct: 47  IKESAISSKRKLKYYCSFICTPIKKLLSTFKLLIIIGLYSFIGAHIFMYLEVPTDLEARE 106

Query: 274 NSF 266
           + F
Sbjct: 107 DGF 109


>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform a protein.
          Length = 1544

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -3

Query: 442 MKKTVILHKRN---FTSFTCTKLRAHHFLFSILVAFFLYRFIN*Y-YLLLKNKTSIKA*T 275
           +K++ I  KR    + SF CT ++     F +L+   LY FI  + ++ L+  T ++A  
Sbjct: 47  IKESAISSKRKLKYYCSFICTPIKKLLSTFKLLIIIGLYSFIGAHIFMYLEVPTDLEARE 106

Query: 274 NSF 266
           + F
Sbjct: 107 DGF 109


>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform b protein.
          Length = 1720

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -3

Query: 442 MKKTVILHKRN---FTSFTCTKLRAHHFLFSILVAFFLYRFIN*Y-YLLLKNKTSIKA*T 275
           +K++ I  KR    + SF CT ++     F +L+   LY FI  + ++ L+  T ++A  
Sbjct: 47  IKESAISSKRKLKYYCSFICTPIKKLLSTFKLLIIIGLYSFIGAHIFMYLEVPTDLEARE 106

Query: 274 NSF 266
           + F
Sbjct: 107 DGF 109


>AF305937-1|AAG37064.1|  348|Caenorhabditis elegans NADH
           pyrophosphatase protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 469 VIENAVYKRNDLYSSLCPFDLSTVEWFARRSV 564
           +I +    + D   S+CP +L T +WF R  V
Sbjct: 262 MIAHVAVAKIDQKISVCPDELETAQWFTRHQV 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,137,326
Number of Sequences: 27780
Number of extensions: 195951
Number of successful extensions: 433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)