Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_G11
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              25   0.57 
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    25   0.57 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.99 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.2  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 509 LYRSFLLYTAFSITREIDLRIKDEENRNTTQKKFHL 402
           ++  FL+   F  + E   ++ D+EN  T Q + H+
Sbjct: 10  IHSIFLILIIFIYSNETIAQVTDDENCETLQSEVHI 45


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 509 LYRSFLLYTAFSITREIDLRIKDEENRNTTQKKFHL 402
           ++  FL+   F  + E   ++ D+EN  T Q + H+
Sbjct: 10  IHSIFLILIIFIYSNETIAQVTDDENCETLQSEVHI 45


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +1

Query: 490 KRNDLYSSLCP---FDLSTVEWFARRSVY 567
           KRN++Y + CP    D++ V    RR++Y
Sbjct: 205 KRNEIYYNCCPEPYIDITFVVIIRRRTLY 233


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 241 GTEIQHCFFFF*IKDVWLDSNHVFLVNF 158
           G+ I  C FFF +  + LDS    +  F
Sbjct: 372 GSSIWSCLFFFMLILIGLDSQFCTVEGF 399


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 241 GTEIQHCFFFF*IKDVWLDSNHVFLVNF 158
           G+ I  C FFF +  + LDS    +  F
Sbjct: 425 GSSIWSCLFFFMLILIGLDSQFCTVEGF 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,021
Number of Sequences: 438
Number of extensions: 2554
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)