Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_G09
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0454 - 3234331-3236299,3237254-3238074                           31   1.2  
05_01_0051 - 345125-345693,345833-346925                               29   2.8  
03_03_0262 + 15968884-15969687                                         29   4.8  
06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178     28   6.4  
03_05_0737 + 27258320-27259007,27259263-27259435,27262684-272627...    28   6.4  

>06_01_0454 - 3234331-3236299,3237254-3238074
          Length = 929

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
 Frame = -3

Query: 670 FGKYVADCLPKYVQKVQLTAGNELEVLIP-PDAVIPVLSFLKDHHSAQFANLV-DIAGMD 497
           F K + DC  K   K +L +   L+     P A+I + SFL DH S    N V  I    
Sbjct: 340 FYKRIFDCEEKCPPKFELASEEILKRCDGIPLAIISISSFLADHESLYHWNEVKKIISSP 399

Query: 496 VPSRSNRFEIIYNILSLR-YNARIRVKTYTDELTPVDSACDVFKAA 362
           +P  +   E + ++L+L  YN    +++    L+     C++ K++
Sbjct: 400 LPG-NEYLETMQSVLALSYYNLPHDIRSCLLYLSAFPEDCEIAKSS 444


>05_01_0051 - 345125-345693,345833-346925
          Length = 553

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +1

Query: 85  HYFLCLQGWL*S*GTAPMVHSVQSV*TLVPTQGVRPPHASAHRHNELLHIHLEGSP 252
           H FL  +G L    T   +  + S  T   T   RP HA AH H+ LL + L   P
Sbjct: 35  HAFLLRRGLLLGHRTTAGI--LLSAATSTATSASRPAHAHAHAHSHLLRLLLHHLP 88


>03_03_0262 + 15968884-15969687
          Length = 267

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +1

Query: 97  CLQGWL*S*GTAPMVHSVQSV*TLVPTQGVRPPHASAHRHNELLHIHLEGS 249
           C+  WL S  T P+         L P   VRPP A A   N   ++   GS
Sbjct: 118 CVDMWLRSNSTCPLCRCAVIDEALPPPPAVRPPEADAESPNFPTNVLFFGS 168


>06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178
          Length = 518

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 652 DCLPKYVQKVQLTA--GNELEVLIPPDAVIPVLSFL 551
           D LP  V  V+  A  G +  V+IP DAV+ ++SFL
Sbjct: 37  DGLPAAVAPVEAAAPVGEDPMVVIPDDAVLRIISFL 72


>03_05_0737 +
           27258320-27259007,27259263-27259435,27262684-27262758,
           27262832-27263296
          Length = 466

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 458 VIYDFESV*ARGYVHASDIDKVSKLSAV 541
           + YD+ +  A   +H SD+DKVS L+A+
Sbjct: 160 ITYDYVTEDAADLLHQSDLDKVSALAAL 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,857,367
Number of Sequences: 37544
Number of extensions: 396756
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)