Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_G08
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light ch...   178   4e-45
AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical...    84   9e-17
Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical pr...    77   2e-14
AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical ...    64   1e-10
AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical ...    64   1e-10
AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical ...    30   1.6  
AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical ...    29   4.9  
AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D prot...    29   4.9  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    28   8.6  

>U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light chain
           protein 1 protein.
          Length = 89

 Score =  178 bits (433), Expect = 4e-45
 Identities = 79/87 (90%), Positives = 85/87 (97%)
 Frame = -3

Query: 774 DRXAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNX 595
           DR AVIKNADMS++MQQDA+DCATQALEK+NIEKDIAA+IKKEFDKKYNPTWHCIVGRN 
Sbjct: 3   DRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62

Query: 594 GSYVTHETRHFIYFYLGQVAILLFKSG 514
           GSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 63  GSYVTHETKHFIYFYLGQVAILLFKSG 89


>AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.43 protein.
          Length = 186

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 34/83 (40%), Positives = 56/83 (67%)
 Frame = -3

Query: 765 AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNXGSY 586
           A ++++ M   M+Q+A   A +++  +++E DIA  +K  FD++Y P WHCI G++ GS+
Sbjct: 58  ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGKHFGSF 117

Query: 585 VTHETRHFIYFYLGQVAILLFKS 517
           VT E   FIYF +G +A +LFK+
Sbjct: 118 VTFEPDSFIYFRIGTIAFMLFKT 140


>Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical
           protein M18.2 protein.
          Length = 90

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 31/82 (37%), Positives = 50/82 (60%)
 Frame = -3

Query: 759 IKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNXGSYVT 580
           +K  DM +  +   +    +A   +NI+KD+AAF+K+E DKK+  TWH I G+  GS V+
Sbjct: 8   VKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGKCFGSRVS 67

Query: 579 HETRHFIYFYLGQVAILLFKSG 514
           +E  HFI     +V ++++K G
Sbjct: 68  YEMGHFILLKCNKVNVMIYKCG 89


>AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2b protein.
          Length = 129

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 27/81 (33%), Positives = 53/81 (65%)
 Frame = -3

Query: 762 VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNXGSYV 583
           +I++ ++  E  +++      AL+   IE +IA+F+K++FD KY   W C+VGRN GS++
Sbjct: 51  IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL 110

Query: 582 THETRHFIYFYLGQVAILLFK 520
             +   FI+F + +++++LF+
Sbjct: 111 --DPIQFIHFTVSKISVILFR 129


>AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2a protein.
          Length = 111

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 27/81 (33%), Positives = 53/81 (65%)
 Frame = -3

Query: 762 VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNXGSYV 583
           +I++ ++  E  +++      AL+   IE +IA+F+K++FD KY   W C+VGRN GS++
Sbjct: 33  IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL 92

Query: 582 THETRHFIYFYLGQVAILLFK 520
             +   FI+F + +++++LF+
Sbjct: 93  --DPIQFIHFTVSKISVILFR 111


>AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical
           protein Y10G11A.3 protein.
          Length = 134

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = -3

Query: 762 VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKK 634
           +I+  ++  E  +++      AL+   IE +IA+F+K++FD K
Sbjct: 50  IIQETNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAK 92


>AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical
           protein Y38F1A.5 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 599 LRPTMQCQVGLYFLSN 646
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


>AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D
           protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 599 LRPTMQCQVGLYFLSN 646
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 451 YPSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIRAXI 600
           Y  D    + + KI  +L  LTA K  +   S V+V EV     HI+  I
Sbjct: 642 YHLDERDDSLDSKIGAILKKLTADKNAWPFASPVDVKEVPEYYDHIKHPI 691


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,077,171
Number of Sequences: 27780
Number of extensions: 317782
Number of successful extensions: 720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)